Hb_000019_120

Information

Type -
Description -
Location Contig19: 75368-75899
Sequence    

Annotation

kegg
ID rcu:RCOM_1445430
description hypothetical protein
nr
ID XP_012067343.1
description PREDICTED: rRNA-processing protein CGR1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26868 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_120 0.0 - - PREDICTED: rRNA-processing protein CGR1 [Jatropha curcas]
2 Hb_085863_030 0.0937484715 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
3 Hb_007317_200 0.1058622137 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000063_140 0.1095358612 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
5 Hb_002878_020 0.1126522121 - - mitochondrial carrier protein, putative [Ricinus communis]
6 Hb_000056_240 0.1145135345 - - PREDICTED: cullin-3A [Jatropha curcas]
7 Hb_000086_400 0.1159098181 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_005463_040 0.1181691391 - - signal transducer, putative [Ricinus communis]
9 Hb_086639_030 0.1184852608 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_000039_160 0.1186086061 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
11 Hb_000976_170 0.1190300966 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
12 Hb_008221_140 0.1194475651 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
13 Hb_001726_020 0.1201398798 - - PREDICTED: endophilin-A1 [Jatropha curcas]
14 Hb_005539_280 0.1207336085 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
15 Hb_005228_070 0.1212201507 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
16 Hb_058999_020 0.1240580648 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
17 Hb_016901_010 0.1244030509 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
18 Hb_006031_020 0.1246053214 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
19 Hb_004586_340 0.1249034355 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
20 Hb_002183_090 0.1249258383 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000019_120 Hb_000019_120 Hb_085863_030 Hb_085863_030 Hb_000019_120--Hb_085863_030 Hb_007317_200 Hb_007317_200 Hb_000019_120--Hb_007317_200 Hb_000063_140 Hb_000063_140 Hb_000019_120--Hb_000063_140 Hb_002878_020 Hb_002878_020 Hb_000019_120--Hb_002878_020 Hb_000056_240 Hb_000056_240 Hb_000019_120--Hb_000056_240 Hb_000086_400 Hb_000086_400 Hb_000019_120--Hb_000086_400 Hb_085863_030--Hb_000086_400 Hb_009178_030 Hb_009178_030 Hb_085863_030--Hb_009178_030 Hb_085863_030--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_085863_030--Hb_008725_260 Hb_016901_010 Hb_016901_010 Hb_085863_030--Hb_016901_010 Hb_000866_220 Hb_000866_220 Hb_085863_030--Hb_000866_220 Hb_004724_080 Hb_004724_080 Hb_007317_200--Hb_004724_080 Hb_075449_010 Hb_075449_010 Hb_007317_200--Hb_075449_010 Hb_017358_030 Hb_017358_030 Hb_007317_200--Hb_017358_030 Hb_000352_270 Hb_000352_270 Hb_007317_200--Hb_000352_270 Hb_006452_170 Hb_006452_170 Hb_007317_200--Hb_006452_170 Hb_000614_160 Hb_000614_160 Hb_007317_200--Hb_000614_160 Hb_000175_460 Hb_000175_460 Hb_000063_140--Hb_000175_460 Hb_010172_050 Hb_010172_050 Hb_000063_140--Hb_010172_050 Hb_000063_140--Hb_085863_030 Hb_003862_050 Hb_003862_050 Hb_000063_140--Hb_003862_050 Hb_005348_140 Hb_005348_140 Hb_000063_140--Hb_005348_140 Hb_001617_050 Hb_001617_050 Hb_000063_140--Hb_001617_050 Hb_000250_060 Hb_000250_060 Hb_002878_020--Hb_000250_060 Hb_009803_050 Hb_009803_050 Hb_002878_020--Hb_009803_050 Hb_011214_020 Hb_011214_020 Hb_002878_020--Hb_011214_020 Hb_086639_030 Hb_086639_030 Hb_002878_020--Hb_086639_030 Hb_001959_190 Hb_001959_190 Hb_002878_020--Hb_001959_190 Hb_001633_210 Hb_001633_210 Hb_002878_020--Hb_001633_210 Hb_000056_240--Hb_000866_220 Hb_002391_310 Hb_002391_310 Hb_000056_240--Hb_002391_310 Hb_004374_070 Hb_004374_070 Hb_000056_240--Hb_004374_070 Hb_002046_180 Hb_002046_180 Hb_000056_240--Hb_002046_180 Hb_002110_150 Hb_002110_150 Hb_000056_240--Hb_002110_150 Hb_000000_250 Hb_000000_250 Hb_000086_400--Hb_000000_250 Hb_000510_320 Hb_000510_320 Hb_000086_400--Hb_000510_320 Hb_000086_400--Hb_009178_030 Hb_000086_400--Hb_000175_460 Hb_000876_070 Hb_000876_070 Hb_000086_400--Hb_000876_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.60374 6.09588 6.15912 4.98513 7.71412 9.64981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19871 20.1424 18.4887 8.92381 6.28668

CAGE analysis