Hb_000019_130

Information

Type -
Description -
Location Contig19: 76579-79041
Sequence    

Annotation

kegg
ID tcc:TCM_017341
description Pentatricopeptide repeat (PPR) superfamily protein
nr
ID XP_012067344.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
swissprot
ID Q9S7F4
description Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
trembl
ID A0A067L076
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26869 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18876: 79440-79598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_130 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
2 Hb_027472_170 0.0674124006 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
3 Hb_007747_200 0.0682787675 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
4 Hb_000935_050 0.0699041734 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
5 Hb_000997_400 0.0810997265 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
6 Hb_000007_150 0.081517937 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
7 Hb_007075_050 0.0829465706 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_005686_030 0.0841061119 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
9 Hb_006846_110 0.088686392 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
10 Hb_000297_200 0.0889097668 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
11 Hb_000574_350 0.0894068457 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
12 Hb_000457_150 0.0923295377 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
13 Hb_025557_030 0.0936338662 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
14 Hb_010710_040 0.0944153787 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_004807_030 0.0964625659 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
16 Hb_000002_050 0.0964993335 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
17 Hb_003687_100 0.100534707 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
18 Hb_000307_030 0.1006134199 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
19 Hb_000019_060 0.1007648786 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
20 Hb_000482_010 0.1017498463 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]

Gene co-expression network

sample Hb_000019_130 Hb_000019_130 Hb_027472_170 Hb_027472_170 Hb_000019_130--Hb_027472_170 Hb_007747_200 Hb_007747_200 Hb_000019_130--Hb_007747_200 Hb_000935_050 Hb_000935_050 Hb_000019_130--Hb_000935_050 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000007_150 Hb_000007_150 Hb_000019_130--Hb_000007_150 Hb_007075_050 Hb_007075_050 Hb_000019_130--Hb_007075_050 Hb_027472_170--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_027472_170--Hb_000007_150 Hb_168319_030 Hb_168319_030 Hb_027472_170--Hb_168319_030 Hb_005686_030 Hb_005686_030 Hb_027472_170--Hb_005686_030 Hb_000317_280 Hb_000317_280 Hb_007747_200--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_007747_200--Hb_006846_110 Hb_000343_130 Hb_000343_130 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010 Hb_119600_040 Hb_119600_040 Hb_000935_050--Hb_119600_040 Hb_000935_050--Hb_007075_050 Hb_000297_200 Hb_000297_200 Hb_000935_050--Hb_000297_200 Hb_000935_050--Hb_007747_200 Hb_000997_400--Hb_000297_200 Hb_000059_220 Hb_000059_220 Hb_000997_400--Hb_000059_220 Hb_003018_190 Hb_003018_190 Hb_000997_400--Hb_003018_190 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000457_150 Hb_000457_150 Hb_000997_400--Hb_000457_150 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_029584_130 Hb_029584_130 Hb_000007_150--Hb_029584_130 Hb_000000_250 Hb_000000_250 Hb_000007_150--Hb_000000_250 Hb_034585_060 Hb_034585_060 Hb_000007_150--Hb_034585_060 Hb_000007_150--Hb_000297_200 Hb_000427_050 Hb_000427_050 Hb_000007_150--Hb_000427_050 Hb_007075_050--Hb_119600_040 Hb_000019_060 Hb_000019_060 Hb_007075_050--Hb_000019_060 Hb_000236_140 Hb_000236_140 Hb_007075_050--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007075_050--Hb_003687_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22343 1.52655 0.292233 0.546649 1.18123 2.11014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.45451 2.47275 4.25473 1.09989 0.540445

CAGE analysis