Hb_000019_170

Information

Type -
Description -
Location Contig19: 142332-167341
Sequence    

Annotation

kegg
ID rcu:RCOM_1445250
description lysosomal alpha-mannosidase, putative (EC:3.2.1.24)
nr
ID XP_012067351.1
description PREDICTED: alpha-mannosidase [Jatropha curcas]
swissprot
ID C0HJB3
description Alpha-mannosidase OS=Canavalia ensiformis PE=1 SV=1
trembl
ID A0A067L081
description Alpha-mannosidase OS=Jatropha curcas GN=JCGZ_26874 PE=3 SV=1
Gene Ontology
ID GO:0005774
description lysosomal alpha-mannosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18882: 149583-150194 , PASA_asmbl_18883: 150202-154278 , PASA_asmbl_18884: 156067-166874 , PASA_asmbl_18885: 157664-157898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_170 0.0 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
2 Hb_003125_180 0.077885294 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
3 Hb_003058_200 0.0804900678 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
4 Hb_002072_010 0.0970706135 - - conserved hypothetical protein [Ricinus communis]
5 Hb_102763_010 0.0983511922 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
6 Hb_000823_010 0.1006829163 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
7 Hb_000157_070 0.102366028 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
8 Hb_005854_040 0.1033234368 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007317_020 0.104312641 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
10 Hb_000473_030 0.1061892857 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
11 Hb_002851_010 0.1064406806 - - sugar transporter, putative [Ricinus communis]
12 Hb_011032_010 0.1066094888 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
13 Hb_020805_180 0.1100186337 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
14 Hb_002026_070 0.1108829668 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
15 Hb_010381_020 0.1110989519 - - Endosomal P24A protein precursor, putative [Ricinus communis]
16 Hb_053575_020 0.1116371569 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
17 Hb_080147_050 0.1116870968 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
18 Hb_000674_010 0.1123126713 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
19 Hb_000649_060 0.1127827706 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
20 Hb_029879_120 0.1142234205 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000019_170 Hb_000019_170 Hb_003125_180 Hb_003125_180 Hb_000019_170--Hb_003125_180 Hb_003058_200 Hb_003058_200 Hb_000019_170--Hb_003058_200 Hb_002072_010 Hb_002072_010 Hb_000019_170--Hb_002072_010 Hb_102763_010 Hb_102763_010 Hb_000019_170--Hb_102763_010 Hb_000823_010 Hb_000823_010 Hb_000019_170--Hb_000823_010 Hb_000157_070 Hb_000157_070 Hb_000019_170--Hb_000157_070 Hb_011032_010 Hb_011032_010 Hb_003125_180--Hb_011032_010 Hb_169051_010 Hb_169051_010 Hb_003125_180--Hb_169051_010 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120 Hb_000674_010 Hb_000674_010 Hb_003125_180--Hb_000674_010 Hb_003125_180--Hb_003058_200 Hb_003058_200--Hb_002072_010 Hb_003058_200--Hb_000674_010 Hb_021297_020 Hb_021297_020 Hb_003058_200--Hb_021297_020 Hb_002851_010 Hb_002851_010 Hb_003058_200--Hb_002851_010 Hb_030565_110 Hb_030565_110 Hb_002072_010--Hb_030565_110 Hb_002072_010--Hb_000674_010 Hb_000244_260 Hb_000244_260 Hb_002072_010--Hb_000244_260 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_010381_020 Hb_010381_020 Hb_102763_010--Hb_010381_020 Hb_102763_010--Hb_005000_090 Hb_001998_220 Hb_001998_220 Hb_102763_010--Hb_001998_220 Hb_002311_130 Hb_002311_130 Hb_102763_010--Hb_002311_130 Hb_002805_090 Hb_002805_090 Hb_102763_010--Hb_002805_090 Hb_153257_010 Hb_153257_010 Hb_000823_010--Hb_153257_010 Hb_000823_010--Hb_000157_070 Hb_001322_180 Hb_001322_180 Hb_000823_010--Hb_001322_180 Hb_000823_010--Hb_003058_200 Hb_000834_230 Hb_000834_230 Hb_000823_010--Hb_000834_230 Hb_135959_010 Hb_135959_010 Hb_000157_070--Hb_135959_010 Hb_020805_180 Hb_020805_180 Hb_000157_070--Hb_020805_180 Hb_000157_070--Hb_002851_010 Hb_080147_050 Hb_080147_050 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_003626_050 Hb_003626_050 Hb_000157_070--Hb_003626_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15332 9.30981 7.54905 14.64 5.20413 3.54
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00868 1.54959 2.55216 18.1773 13.1541

CAGE analysis