Hb_000019_180

Information

Type transcription factor
Description TF Family: SET
Location Contig19: 169787-171673
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14080g
description POPTRDRAFT_572862; Histone-lysine N-methyltransferase family protein
nr
ID XP_002321077.1
description Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
swissprot
ID Q8VZ17
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2
trembl
ID B9IA63
description Histone-lysine N-methyltransferase OS=Populus trichocarpa GN=POPTR_0014s14080g PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n- h3 lysine-9 specific suvh4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_180 0.0 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
2 Hb_003305_040 0.0998590266 - - AP47/50p mRNA family protein [Populus trichocarpa]
3 Hb_000800_090 0.1053403359 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
4 Hb_002392_010 0.1055929126 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
5 Hb_006277_010 0.1108162953 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
6 Hb_005701_120 0.1113495281 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
7 Hb_002110_100 0.113382129 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
8 Hb_000060_050 0.1151086116 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
9 Hb_021943_090 0.1153174521 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
10 Hb_005218_020 0.1173062637 - - Uncharacterized protein isoform 3 [Theobroma cacao]
11 Hb_004046_030 0.1178170566 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
12 Hb_000297_120 0.1192378402 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
13 Hb_005601_040 0.1218519608 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
14 Hb_000185_220 0.122106638 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
15 Hb_000946_110 0.1230614613 - - GTP cyclohydrolase I, putative [Ricinus communis]
16 Hb_171718_010 0.1239960593 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
17 Hb_002876_270 0.1250057726 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
18 Hb_170138_010 0.1250944063 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000917_130 0.1254236862 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
20 Hb_002660_170 0.1258697597 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000019_180 Hb_000019_180 Hb_003305_040 Hb_003305_040 Hb_000019_180--Hb_003305_040 Hb_000800_090 Hb_000800_090 Hb_000019_180--Hb_000800_090 Hb_002392_010 Hb_002392_010 Hb_000019_180--Hb_002392_010 Hb_006277_010 Hb_006277_010 Hb_000019_180--Hb_006277_010 Hb_005701_120 Hb_005701_120 Hb_000019_180--Hb_005701_120 Hb_002110_100 Hb_002110_100 Hb_000019_180--Hb_002110_100 Hb_000060_050 Hb_000060_050 Hb_003305_040--Hb_000060_050 Hb_000252_100 Hb_000252_100 Hb_003305_040--Hb_000252_100 Hb_003305_040--Hb_002110_100 Hb_000454_090 Hb_000454_090 Hb_003305_040--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_003305_040--Hb_000173_410 Hb_005601_040 Hb_005601_040 Hb_003305_040--Hb_005601_040 Hb_000800_090--Hb_005701_120 Hb_000025_190 Hb_000025_190 Hb_000800_090--Hb_000025_190 Hb_001946_310 Hb_001946_310 Hb_000800_090--Hb_001946_310 Hb_004046_030 Hb_004046_030 Hb_000800_090--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_000800_090--Hb_000185_220 Hb_005648_010 Hb_005648_010 Hb_000800_090--Hb_005648_010 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_032920_070 Hb_032920_070 Hb_002392_010--Hb_032920_070 Hb_002392_010--Hb_002110_100 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_002392_010--Hb_005601_040 Hb_006277_010--Hb_004046_030 Hb_003206_110 Hb_003206_110 Hb_006277_010--Hb_003206_110 Hb_170138_010 Hb_170138_010 Hb_006277_010--Hb_170138_010 Hb_000950_010 Hb_000950_010 Hb_006277_010--Hb_000950_010 Hb_006277_010--Hb_000185_220 Hb_006277_010--Hb_005601_040 Hb_000402_130 Hb_000402_130 Hb_005701_120--Hb_000402_130 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_005701_120--Hb_002110_100 Hb_185830_060 Hb_185830_060 Hb_005701_120--Hb_185830_060 Hb_001957_010 Hb_001957_010 Hb_005701_120--Hb_001957_010 Hb_002110_100--Hb_032920_070 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51484 2.58632 5.88448 12.9732 1.66101 5.46049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44071 5.82443 8.55427 7.02465 10.0449

CAGE analysis