Hb_000019_210

Information

Type transcription factor
Description TF Family: GNAT
Location Contig19: 239931-245661
Sequence    

Annotation

kegg
ID rcu:RCOM_1445070
description n-acetyltransferase mak3, putative (EC:2.3.1.88)
nr
ID XP_012067356.1
description PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
swissprot
ID O80438
description N-alpha-acetyltransferase MAK3 OS=Arabidopsis thaliana GN=MAK3 PE=2 SV=1
trembl
ID A0A067LCN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26877 PE=4 SV=1
Gene Ontology
ID GO:0004596
description n-alpha-acetyltransferase mak3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18886: 240019-244853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_210 0.0 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
2 Hb_001811_050 0.0590248254 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
3 Hb_002043_190 0.073806756 - - rwd domain-containing protein, putative [Ricinus communis]
4 Hb_005993_040 0.0742660422 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
5 Hb_003050_080 0.0831299618 - - 40S ribosomal protein S14, putative [Ricinus communis]
6 Hb_001489_060 0.0850910058 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
7 Hb_007576_040 0.086475136 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
8 Hb_000832_140 0.0869508377 - - actin depolymerizing factor 4 [Hevea brasiliensis]
9 Hb_001512_060 0.0872219238 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
10 Hb_011571_010 0.0886499661 - - Metal tolerance protein C4, putative [Ricinus communis]
11 Hb_172632_090 0.0895353932 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
12 Hb_002928_130 0.0898902828 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
13 Hb_002081_130 0.0902254057 - - serine carboxypeptidase, putative [Ricinus communis]
14 Hb_002214_040 0.0905000412 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_003976_010 0.0925725055 - - methionine aminopeptidase, putative [Ricinus communis]
16 Hb_008878_030 0.0941877932 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
17 Hb_001117_100 0.0948724316 - - 40S ribosomal protein S16A [Hevea brasiliensis]
18 Hb_063716_050 0.0952616695 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
19 Hb_000221_220 0.0957126916 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
20 Hb_007477_070 0.0957323012 - - hypothetical protein JCGZ_17593 [Jatropha curcas]

Gene co-expression network

sample Hb_000019_210 Hb_000019_210 Hb_001811_050 Hb_001811_050 Hb_000019_210--Hb_001811_050 Hb_002043_190 Hb_002043_190 Hb_000019_210--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000019_210--Hb_005993_040 Hb_003050_080 Hb_003050_080 Hb_000019_210--Hb_003050_080 Hb_001489_060 Hb_001489_060 Hb_000019_210--Hb_001489_060 Hb_007576_040 Hb_007576_040 Hb_000019_210--Hb_007576_040 Hb_000832_140 Hb_000832_140 Hb_001811_050--Hb_000832_140 Hb_002214_040 Hb_002214_040 Hb_001811_050--Hb_002214_040 Hb_001811_050--Hb_002043_190 Hb_011571_010 Hb_011571_010 Hb_001811_050--Hb_011571_010 Hb_002449_020 Hb_002449_020 Hb_001811_050--Hb_002449_020 Hb_002043_190--Hb_005993_040 Hb_015746_010 Hb_015746_010 Hb_002043_190--Hb_015746_010 Hb_002081_130 Hb_002081_130 Hb_002043_190--Hb_002081_130 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_002233_150 Hb_002233_150 Hb_002043_190--Hb_002233_150 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_063716_050 Hb_063716_050 Hb_003050_080--Hb_063716_050 Hb_002686_020 Hb_002686_020 Hb_003050_080--Hb_002686_020 Hb_003050_080--Hb_000832_140 Hb_003050_080--Hb_001489_060 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_000056_200 Hb_000056_200 Hb_003050_080--Hb_000056_200 Hb_001489_060--Hb_063716_050 Hb_002226_070 Hb_002226_070 Hb_001489_060--Hb_002226_070 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001821_010 Hb_001821_010 Hb_001489_060--Hb_001821_010 Hb_001489_060--Hb_000056_200 Hb_010661_030 Hb_010661_030 Hb_007576_040--Hb_010661_030 Hb_007951_060 Hb_007951_060 Hb_007576_040--Hb_007951_060 Hb_005503_030 Hb_005503_030 Hb_007576_040--Hb_005503_030 Hb_007576_040--Hb_063716_050 Hb_000327_120 Hb_000327_120 Hb_007576_040--Hb_000327_120 Hb_001512_060 Hb_001512_060 Hb_007576_040--Hb_001512_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0447 5.55774 13.1304 6.43804 24.446 19.4486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1878 30.2208 20.9438 16.3729 6.31507

CAGE analysis