Hb_000019_220

Information

Type transcription factor
Description TF Family: ERF
Location Contig19: 260190-261866
Sequence    

Annotation

kegg
ID rcu:RCOM_1445050
description DNA binding protein, putative
nr
ID XP_012067570.1
description PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
swissprot
ID Q9FH54
description Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=1 SV=1
trembl
ID A0A067L086
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26879 PE=4 SV=1
Gene Ontology
ID GO:0044237
description ethylene-responsive transcription factor erf113-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18888: 260553-261359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_220 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
2 Hb_000045_230 0.0998369267 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
3 Hb_005000_310 0.1093486933 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
4 Hb_002311_240 0.1160796834 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
5 Hb_003057_080 0.1298630768 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
6 Hb_010647_010 0.1369843013 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
7 Hb_002818_080 0.1382825522 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
8 Hb_001250_140 0.1453296461 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
9 Hb_012506_080 0.1507598893 - - amino acid transporter, putative [Ricinus communis]
10 Hb_001699_240 0.1510356308 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
11 Hb_004037_010 0.152467134 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
12 Hb_011283_010 0.1562531637 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
13 Hb_001366_250 0.1563051737 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
14 Hb_007527_020 0.1568567172 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
15 Hb_058620_010 0.1579265465 - - cytochrome P450, putative [Ricinus communis]
16 Hb_001165_040 0.1592828788 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
17 Hb_000281_200 0.1593690396 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
18 Hb_003538_020 0.1596314071 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
19 Hb_001930_060 0.1623410783 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
20 Hb_002805_230 0.1629244372 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000019_220 Hb_000019_220 Hb_000045_230 Hb_000045_230 Hb_000019_220--Hb_000045_230 Hb_005000_310 Hb_005000_310 Hb_000019_220--Hb_005000_310 Hb_002311_240 Hb_002311_240 Hb_000019_220--Hb_002311_240 Hb_003057_080 Hb_003057_080 Hb_000019_220--Hb_003057_080 Hb_010647_010 Hb_010647_010 Hb_000019_220--Hb_010647_010 Hb_002818_080 Hb_002818_080 Hb_000019_220--Hb_002818_080 Hb_000045_230--Hb_003057_080 Hb_004037_010 Hb_004037_010 Hb_000045_230--Hb_004037_010 Hb_011283_010 Hb_011283_010 Hb_000045_230--Hb_011283_010 Hb_001699_240 Hb_001699_240 Hb_000045_230--Hb_001699_240 Hb_001165_040 Hb_001165_040 Hb_000045_230--Hb_001165_040 Hb_000614_180 Hb_000614_180 Hb_005000_310--Hb_000614_180 Hb_001366_250 Hb_001366_250 Hb_005000_310--Hb_001366_250 Hb_005000_310--Hb_000045_230 Hb_005000_310--Hb_002311_240 Hb_005000_310--Hb_003057_080 Hb_002311_240--Hb_010647_010 Hb_001250_140 Hb_001250_140 Hb_002311_240--Hb_001250_140 Hb_002311_240--Hb_003057_080 Hb_000347_550 Hb_000347_550 Hb_002311_240--Hb_000347_550 Hb_003057_080--Hb_000347_550 Hb_080225_010 Hb_080225_010 Hb_003057_080--Hb_080225_010 Hb_003057_080--Hb_011283_010 Hb_012707_050 Hb_012707_050 Hb_010647_010--Hb_012707_050 Hb_010647_010--Hb_001250_140 Hb_073171_020 Hb_073171_020 Hb_010647_010--Hb_073171_020 Hb_000213_130 Hb_000213_130 Hb_010647_010--Hb_000213_130 Hb_002818_080--Hb_001699_240 Hb_009568_010 Hb_009568_010 Hb_002818_080--Hb_009568_010 Hb_000141_070 Hb_000141_070 Hb_002818_080--Hb_000141_070 Hb_001930_060 Hb_001930_060 Hb_002818_080--Hb_001930_060 Hb_001456_040 Hb_001456_040 Hb_002818_080--Hb_001456_040 Hb_007483_040 Hb_007483_040 Hb_002818_080--Hb_007483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.506061 0.0567567 1.21243 0.0168586 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.534342 0.517315 0 22.6316 0.133744

CAGE analysis