Hb_000019_230

Information

Type -
Description -
Location Contig19: 282196-285611
Sequence    

Annotation

kegg
ID cit:102624833
description cytochrome b-c1 complex subunit Rieske-2, mitochondrial-like
nr
ID XP_012067358.1
description PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
swissprot
ID P51133
description Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067L0B8
description Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Jatropha curcas GN=JCGZ_26880 PE=4 SV=1
Gene Ontology
ID GO:0005743
description cytochrome b-c1 complex subunit rieske- mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18890: 282268-285616 , PASA_asmbl_18891: 282313-284260
cDNA
(Sanger)
(ID:Location)		 040_A21.ab1: 282313-283963

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_230 0.0 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
2 Hb_003551_020 0.0586839434 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
3 Hb_003120_060 0.059230547 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
4 Hb_003038_030 0.0660296206 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
5 Hb_000188_100 0.0692163993 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
6 Hb_000977_080 0.0702831711 - - type II inositol 5-phosphatase, putative [Ricinus communis]
7 Hb_004195_160 0.0713249982 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
8 Hb_005928_060 0.0748195468 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
9 Hb_000923_020 0.0754186009 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
10 Hb_000045_130 0.0758387474 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
11 Hb_009767_120 0.0779025873 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
12 Hb_007426_230 0.0786137948 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
13 Hb_148912_010 0.081165288 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000905_190 0.0813424319 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
15 Hb_003642_060 0.0814096921 - - hypothetical protein RCOM_1189860 [Ricinus communis]
16 Hb_001369_650 0.0816224681 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
17 Hb_001214_130 0.0817777468 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
18 Hb_003005_020 0.0820475532 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
19 Hb_003097_150 0.0821742435 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
20 Hb_000398_180 0.0833800146 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]

Gene co-expression network

sample Hb_000019_230 Hb_000019_230 Hb_003551_020 Hb_003551_020 Hb_000019_230--Hb_003551_020 Hb_003120_060 Hb_003120_060 Hb_000019_230--Hb_003120_060 Hb_003038_030 Hb_003038_030 Hb_000019_230--Hb_003038_030 Hb_000188_100 Hb_000188_100 Hb_000019_230--Hb_000188_100 Hb_000977_080 Hb_000977_080 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_003551_020--Hb_000977_080 Hb_000045_130 Hb_000045_130 Hb_003551_020--Hb_000045_130 Hb_000392_270 Hb_000392_270 Hb_003551_020--Hb_000392_270 Hb_003878_190 Hb_003878_190 Hb_003551_020--Hb_003878_190 Hb_000154_080 Hb_000154_080 Hb_003551_020--Hb_000154_080 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_003120_060--Hb_000188_100 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003120_060--Hb_003038_030 Hb_148912_010 Hb_148912_010 Hb_003038_030--Hb_148912_010 Hb_002411_170 Hb_002411_170 Hb_003038_030--Hb_002411_170 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060 Hb_000787_110 Hb_000787_110 Hb_000188_100--Hb_000787_110 Hb_000188_100--Hb_003038_030 Hb_079820_010 Hb_079820_010 Hb_000188_100--Hb_079820_010 Hb_000386_040 Hb_000386_040 Hb_000188_100--Hb_000386_040 Hb_000977_080--Hb_000392_270 Hb_000977_080--Hb_000045_130 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_001369_650 Hb_001369_650 Hb_000977_080--Hb_001369_650 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.3095 38.3771 26.049 29.3625 111.57 117.282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.7587 113.843 63.466 27.4134 17.3284

CAGE analysis