Hb_000020_050

Information

Type -
Description -
Location Contig20: 112981-115050
Sequence    

Annotation

kegg
ID tcc:TCM_021927
description Expansin A4, ALPHA 1.6,EXPA4
nr
ID XP_012074942.1
description PREDICTED: expansin-A6 [Jatropha curcas]
swissprot
ID O48818
description Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1
trembl
ID A0A067KHM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09075 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20139: 113080-115208
cDNA
(Sanger)
(ID:Location)		 009_G12.ab1: 113066-114450 , 052_O14.ab1: 113080-114542

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_050 0.0 - - PREDICTED: expansin-A6 [Jatropha curcas]
2 Hb_001971_040 0.0833821309 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
3 Hb_006693_010 0.0877896459 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
4 Hb_003935_040 0.0902390763 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
5 Hb_000345_230 0.0919135907 - - -
6 Hb_001348_100 0.104169807 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
7 Hb_001141_440 0.1091880095 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
8 Hb_001709_090 0.1111316021 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
9 Hb_025787_020 0.1113118025 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
10 Hb_009252_080 0.1116002471 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
11 Hb_000522_160 0.1134733745 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
12 Hb_000359_100 0.114505112 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000162_190 0.1150326587 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
14 Hb_002045_210 0.1152315621 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
15 Hb_003750_120 0.1166462784 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
16 Hb_006810_040 0.1170543803 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_002028_270 0.1206689058 - - Pectinesterase-1 precursor, putative [Ricinus communis]
18 Hb_007126_010 0.1210952138 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
19 Hb_000853_250 0.1249246048 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
20 Hb_159809_040 0.1252536729 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000020_050 Hb_000020_050 Hb_001971_040 Hb_001971_040 Hb_000020_050--Hb_001971_040 Hb_006693_010 Hb_006693_010 Hb_000020_050--Hb_006693_010 Hb_003935_040 Hb_003935_040 Hb_000020_050--Hb_003935_040 Hb_000345_230 Hb_000345_230 Hb_000020_050--Hb_000345_230 Hb_001348_100 Hb_001348_100 Hb_000020_050--Hb_001348_100 Hb_001141_440 Hb_001141_440 Hb_000020_050--Hb_001141_440 Hb_006810_040 Hb_006810_040 Hb_001971_040--Hb_006810_040 Hb_002028_270 Hb_002028_270 Hb_001971_040--Hb_002028_270 Hb_089140_070 Hb_089140_070 Hb_001971_040--Hb_089140_070 Hb_001971_040--Hb_006693_010 Hb_010080_050 Hb_010080_050 Hb_001971_040--Hb_010080_050 Hb_000522_160 Hb_000522_160 Hb_006693_010--Hb_000522_160 Hb_006693_010--Hb_001348_100 Hb_006693_010--Hb_006810_040 Hb_005332_030 Hb_005332_030 Hb_006693_010--Hb_005332_030 Hb_000162_190 Hb_000162_190 Hb_003935_040--Hb_000162_190 Hb_003935_040--Hb_000345_230 Hb_000310_110 Hb_000310_110 Hb_003935_040--Hb_000310_110 Hb_015934_080 Hb_015934_080 Hb_003935_040--Hb_015934_080 Hb_009189_100 Hb_009189_100 Hb_003935_040--Hb_009189_100 Hb_159809_040 Hb_159809_040 Hb_000345_230--Hb_159809_040 Hb_009252_080 Hb_009252_080 Hb_000345_230--Hb_009252_080 Hb_000345_230--Hb_001141_440 Hb_001709_090 Hb_001709_090 Hb_000345_230--Hb_001709_090 Hb_000345_230--Hb_000522_160 Hb_001348_100--Hb_000522_160 Hb_001348_100--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_001348_100--Hb_000538_290 Hb_001348_100--Hb_006810_040 Hb_000297_210 Hb_000297_210 Hb_001348_100--Hb_000297_210 Hb_000853_250 Hb_000853_250 Hb_001141_440--Hb_000853_250 Hb_001141_440--Hb_000162_190 Hb_001141_440--Hb_001971_040 Hb_000062_280 Hb_000062_280 Hb_001141_440--Hb_000062_280 Hb_001141_440--Hb_009252_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164733 2.69223 33.1885 45.6937 0.114452 0.322198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.928335 0.273849 0 5.82212 7.88862

CAGE analysis