Hb_000020_070

Information

Type -
Description -
Location Contig20: 119892-125654
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11410g
description hypothetical protein
nr
ID XP_012074945.1
description PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID A0A067KUX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09077 PE=3 SV=1
Gene Ontology
ID GO:0004674
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20142: 119890-125590
cDNA
(Sanger)
(ID:Location)		 040_N05.ab1: 121737-125590

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_070 0.0 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
2 Hb_001247_020 0.1246948588 - - galactinol synthase family protein [Populus trichocarpa]
3 Hb_001636_060 0.1478809366 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
4 Hb_007894_180 0.161602715 - - PREDICTED: cytochrome P450 716B1-like [Jatropha curcas]
5 Hb_001511_250 0.1626413876 - - fatty acid desaturase [Manihot esculenta]
6 Hb_005080_020 0.1655199116 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
7 Hb_119316_020 0.1708261533 - - -
8 Hb_002477_100 0.1749343245 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
9 Hb_001040_060 0.1755620488 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
10 Hb_048476_040 0.1814714504 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
11 Hb_000320_020 0.1815966781 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
12 Hb_000186_030 0.1832491813 - - PREDICTED: uncharacterized protein LOC105649276 isoform X1 [Jatropha curcas]
13 Hb_000123_240 0.1834227089 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
14 Hb_007218_060 0.186493459 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
15 Hb_000753_110 0.1885849299 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
16 Hb_054865_050 0.1886870392 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_000009_150 0.1918617005 - - carbohydrate transporter, putative [Ricinus communis]
18 Hb_006120_150 0.1928461834 - - invertase [Hevea brasiliensis]
19 Hb_008747_010 0.1928774961 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
20 Hb_012366_050 0.1968864979 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000020_070 Hb_000020_070 Hb_001247_020 Hb_001247_020 Hb_000020_070--Hb_001247_020 Hb_001636_060 Hb_001636_060 Hb_000020_070--Hb_001636_060 Hb_007894_180 Hb_007894_180 Hb_000020_070--Hb_007894_180 Hb_001511_250 Hb_001511_250 Hb_000020_070--Hb_001511_250 Hb_005080_020 Hb_005080_020 Hb_000020_070--Hb_005080_020 Hb_119316_020 Hb_119316_020 Hb_000020_070--Hb_119316_020 Hb_000123_240 Hb_000123_240 Hb_001247_020--Hb_000123_240 Hb_001247_020--Hb_005080_020 Hb_048476_040 Hb_048476_040 Hb_001247_020--Hb_048476_040 Hb_007218_060 Hb_007218_060 Hb_001247_020--Hb_007218_060 Hb_012366_050 Hb_012366_050 Hb_001247_020--Hb_012366_050 Hb_001636_060--Hb_001511_250 Hb_001636_060--Hb_119316_020 Hb_031108_010 Hb_031108_010 Hb_001636_060--Hb_031108_010 Hb_001636_060--Hb_005080_020 Hb_001898_130 Hb_001898_130 Hb_001636_060--Hb_001898_130 Hb_000567_330 Hb_000567_330 Hb_007894_180--Hb_000567_330 Hb_001179_010 Hb_001179_010 Hb_007894_180--Hb_001179_010 Hb_001040_060 Hb_001040_060 Hb_007894_180--Hb_001040_060 Hb_000914_140 Hb_000914_140 Hb_007894_180--Hb_000914_140 Hb_004899_110 Hb_004899_110 Hb_007894_180--Hb_004899_110 Hb_001511_250--Hb_119316_020 Hb_001511_250--Hb_005080_020 Hb_001511_250--Hb_031108_010 Hb_000086_620 Hb_000086_620 Hb_001511_250--Hb_000086_620 Hb_005080_020--Hb_048476_040 Hb_001369_020 Hb_001369_020 Hb_005080_020--Hb_001369_020 Hb_132840_020 Hb_132840_020 Hb_005080_020--Hb_132840_020 Hb_001623_410 Hb_001623_410 Hb_005080_020--Hb_001623_410 Hb_000009_150 Hb_000009_150 Hb_005080_020--Hb_000009_150 Hb_000329_790 Hb_000329_790 Hb_005080_020--Hb_000329_790 Hb_119316_020--Hb_000086_620 Hb_001579_070 Hb_001579_070 Hb_119316_020--Hb_001579_070 Hb_119316_020--Hb_031108_010 Hb_001242_180 Hb_001242_180 Hb_119316_020--Hb_001242_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.229073 15.0851 22.2677 7.8069 0.0371463 0.0241617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.764984 2.9861 5.49039 6.47263 8.92935

CAGE analysis