Hb_000020_100

Information

Type -
Description -
Location Contig20: 194232-196959
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08720g
description POPTRDRAFT_819173; hypothetical protein
nr
ID XP_012074958.1
description PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
swissprot
ID Q09893
description Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=3 SV=1
trembl
ID A0A067KHP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09085 PE=4 SV=1
Gene Ontology
ID GO:0016787
description ripening-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20150: 194251-196800 , PASA_asmbl_20151: 196204-196433 , PASA_asmbl_20152: 195364-202022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_100 0.0 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
2 Hb_031022_020 0.1325639524 - - -
3 Hb_000637_020 0.1407648072 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
4 Hb_084849_010 0.1464389337 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002026_050 0.1639316348 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
6 Hb_002078_290 0.1738974299 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
7 Hb_118939_010 0.1753276259 - - protein binding protein, putative [Ricinus communis]
8 Hb_004109_210 0.1795904492 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
9 Hb_004631_200 0.1822937846 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000072_190 0.1853800145 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
11 Hb_007044_090 0.190358398 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
12 Hb_004116_070 0.1903848183 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
13 Hb_004994_250 0.194149624 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
14 Hb_000077_160 0.1951385357 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
15 Hb_000191_050 0.1964056775 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
16 Hb_089140_110 0.1976022273 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_000740_150 0.1984935453 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
18 Hb_002450_030 0.1997305018 - - ATPP2-A13, putative [Ricinus communis]
19 Hb_005054_020 0.2010535733 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
20 Hb_013358_020 0.2011492616 - - ccr4-associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000020_100 Hb_000020_100 Hb_031022_020 Hb_031022_020 Hb_000020_100--Hb_031022_020 Hb_000637_020 Hb_000637_020 Hb_000020_100--Hb_000637_020 Hb_084849_010 Hb_084849_010 Hb_000020_100--Hb_084849_010 Hb_002026_050 Hb_002026_050 Hb_000020_100--Hb_002026_050 Hb_002078_290 Hb_002078_290 Hb_000020_100--Hb_002078_290 Hb_118939_010 Hb_118939_010 Hb_000020_100--Hb_118939_010 Hb_000077_160 Hb_000077_160 Hb_031022_020--Hb_000077_160 Hb_031022_020--Hb_002078_290 Hb_007044_090 Hb_007044_090 Hb_031022_020--Hb_007044_090 Hb_003849_190 Hb_003849_190 Hb_031022_020--Hb_003849_190 Hb_002374_270 Hb_002374_270 Hb_031022_020--Hb_002374_270 Hb_000637_020--Hb_084849_010 Hb_001135_030 Hb_001135_030 Hb_000637_020--Hb_001135_030 Hb_000191_050 Hb_000191_050 Hb_000637_020--Hb_000191_050 Hb_013358_020 Hb_013358_020 Hb_000637_020--Hb_013358_020 Hb_000035_050 Hb_000035_050 Hb_000637_020--Hb_000035_050 Hb_000637_020--Hb_002374_270 Hb_084849_010--Hb_013358_020 Hb_000072_190 Hb_000072_190 Hb_084849_010--Hb_000072_190 Hb_084849_010--Hb_000035_050 Hb_002450_030 Hb_002450_030 Hb_084849_010--Hb_002450_030 Hb_000749_070 Hb_000749_070 Hb_084849_010--Hb_000749_070 Hb_004109_210 Hb_004109_210 Hb_002026_050--Hb_004109_210 Hb_000365_280 Hb_000365_280 Hb_002026_050--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_002026_050--Hb_002893_030 Hb_001059_110 Hb_001059_110 Hb_002026_050--Hb_001059_110 Hb_005408_080 Hb_005408_080 Hb_002026_050--Hb_005408_080 Hb_007163_050 Hb_007163_050 Hb_002026_050--Hb_007163_050 Hb_002078_290--Hb_000077_160 Hb_002078_290--Hb_003849_190 Hb_000028_430 Hb_000028_430 Hb_002078_290--Hb_000028_430 Hb_002078_290--Hb_084849_010 Hb_004218_120 Hb_004218_120 Hb_002078_290--Hb_004218_120 Hb_012286_060 Hb_012286_060 Hb_118939_010--Hb_012286_060 Hb_005348_150 Hb_005348_150 Hb_118939_010--Hb_005348_150 Hb_118939_010--Hb_007044_090 Hb_001579_300 Hb_001579_300 Hb_118939_010--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_118939_010--Hb_006925_050 Hb_007483_060 Hb_007483_060 Hb_118939_010--Hb_007483_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4189 91.6191 128.756 217.932 8.27234 2.88564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0568 58.8135 31.5927 5.23906 28.7933

CAGE analysis