Hb_000020_120

Information

Type -
Description -
Location Contig20: 213788-224260
Sequence    

Annotation

kegg
ID rcu:RCOM_0761610
description Mitochondrial respiratory chain complexes assembly protein AFG3, putative (EC:3.6.4.3)
nr
ID XP_012074959.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
swissprot
ID Q0DHL4
description ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1
trembl
ID A0A067KKX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09086 PE=3 SV=1
Gene Ontology
ID GO:0016021
description atp-dependent zinc metalloprotease ftsh mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20154: 213902-233377 , PASA_asmbl_20155: 213903-233255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_120 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
2 Hb_000479_140 0.0818728255 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
3 Hb_042202_030 0.0890374704 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
4 Hb_000406_130 0.0919616734 - - vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_007416_060 0.0928170634 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
6 Hb_008725_170 0.0928706848 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
7 Hb_003376_250 0.0980910525 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
8 Hb_000471_110 0.1065266459 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
9 Hb_002307_170 0.1068993028 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_000165_160 0.1124835813 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
11 Hb_001352_020 0.1130001975 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
12 Hb_079312_010 0.1136342152 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005488_200 0.1139770939 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
14 Hb_000982_080 0.1162490002 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
15 Hb_000603_080 0.1170405958 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
16 Hb_006162_010 0.1183140156 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
17 Hb_002799_070 0.1183179279 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
18 Hb_000327_180 0.1189110399 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
19 Hb_010344_050 0.1196641989 - - Adagio 1 -like protein [Gossypium arboreum]
20 Hb_001242_130 0.1228392439 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000020_120 Hb_000020_120 Hb_000479_140 Hb_000479_140 Hb_000020_120--Hb_000479_140 Hb_042202_030 Hb_042202_030 Hb_000020_120--Hb_042202_030 Hb_000406_130 Hb_000406_130 Hb_000020_120--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_000020_120--Hb_007416_060 Hb_008725_170 Hb_008725_170 Hb_000020_120--Hb_008725_170 Hb_003376_250 Hb_003376_250 Hb_000020_120--Hb_003376_250 Hb_000471_110 Hb_000471_110 Hb_000479_140--Hb_000471_110 Hb_000479_140--Hb_000406_130 Hb_001242_130 Hb_001242_130 Hb_000479_140--Hb_001242_130 Hb_010344_050 Hb_010344_050 Hb_000479_140--Hb_010344_050 Hb_000497_300 Hb_000497_300 Hb_000479_140--Hb_000497_300 Hb_007747_210 Hb_007747_210 Hb_042202_030--Hb_007747_210 Hb_003688_150 Hb_003688_150 Hb_042202_030--Hb_003688_150 Hb_002799_070 Hb_002799_070 Hb_042202_030--Hb_002799_070 Hb_079312_010 Hb_079312_010 Hb_042202_030--Hb_079312_010 Hb_000116_430 Hb_000116_430 Hb_042202_030--Hb_000116_430 Hb_000406_130--Hb_000471_110 Hb_001352_020 Hb_001352_020 Hb_000406_130--Hb_001352_020 Hb_008176_010 Hb_008176_010 Hb_000406_130--Hb_008176_010 Hb_000116_260 Hb_000116_260 Hb_000406_130--Hb_000116_260 Hb_000406_130--Hb_003376_250 Hb_005488_200 Hb_005488_200 Hb_007416_060--Hb_005488_200 Hb_007416_060--Hb_000116_260 Hb_000783_020 Hb_000783_020 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130 Hb_006816_470 Hb_006816_470 Hb_008725_170--Hb_006816_470 Hb_008725_170--Hb_000406_130 Hb_008725_170--Hb_007416_060 Hb_008725_170--Hb_000479_140 Hb_003086_080 Hb_003086_080 Hb_008725_170--Hb_003086_080 Hb_000982_080 Hb_000982_080 Hb_003376_250--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_003376_250--Hb_011344_190 Hb_003376_250--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_003376_250--Hb_001195_200 Hb_000327_180 Hb_000327_180 Hb_003376_250--Hb_000327_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.09732 6.40527 5.28899 10.532 5.26903 8.85557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2023 14.9307 28.7659 18.6386 19.2119

CAGE analysis