Hb_000020_140

Information

Type -
Description -
Location Contig20: 279018-280022
Sequence    

Annotation

kegg
ID rcu:RCOM_0451750
description Zeamatin precursor, putative
nr
ID XP_012074976.1
description PREDICTED: thaumatin-like protein [Jatropha curcas]
swissprot
ID Q53MB8
description Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1
trembl
ID B9SZY6
description Zeamatin, putative OS=Ricinus communis GN=RCOM_0451750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20156: 279199-280147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_140 0.0 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
2 Hb_000449_070 0.0738056138 - - unnamed protein product [Vitis vinifera]
3 Hb_049453_010 0.0918772281 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_006252_070 0.1051963967 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
5 Hb_006386_010 0.1150326498 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
6 Hb_002171_050 0.1154432783 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
7 Hb_004625_020 0.1193290648 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
8 Hb_001195_710 0.1200710825 - - glycosyltransferase family GT8 protein [Populus deltoides]
9 Hb_005183_130 0.120767388 - - glycogenin, putative [Ricinus communis]
10 Hb_071079_040 0.1213341356 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
11 Hb_002014_130 0.1215406554 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004586_440 0.1228716837 - - Blue copper protein precursor, putative [Ricinus communis]
13 Hb_004020_030 0.1280017744 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
14 Hb_000188_040 0.1282643153 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
15 Hb_009421_060 0.130418072 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
16 Hb_001269_160 0.1326528305 - - conserved hypothetical protein [Ricinus communis]
17 Hb_028514_010 0.13287491 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
18 Hb_004531_160 0.1331469986 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
19 Hb_006717_060 0.1333638747 - - PREDICTED: peroxidase 42 [Jatropha curcas]
20 Hb_000339_060 0.1341955771 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000020_140 Hb_000020_140 Hb_000449_070 Hb_000449_070 Hb_000020_140--Hb_000449_070 Hb_049453_010 Hb_049453_010 Hb_000020_140--Hb_049453_010 Hb_006252_070 Hb_006252_070 Hb_000020_140--Hb_006252_070 Hb_006386_010 Hb_006386_010 Hb_000020_140--Hb_006386_010 Hb_002171_050 Hb_002171_050 Hb_000020_140--Hb_002171_050 Hb_004625_020 Hb_004625_020 Hb_000020_140--Hb_004625_020 Hb_000449_070--Hb_002171_050 Hb_004020_030 Hb_004020_030 Hb_000449_070--Hb_004020_030 Hb_002997_150 Hb_002997_150 Hb_000449_070--Hb_002997_150 Hb_071079_040 Hb_071079_040 Hb_000449_070--Hb_071079_040 Hb_011224_070 Hb_011224_070 Hb_000449_070--Hb_011224_070 Hb_049453_010--Hb_000449_070 Hb_000173_180 Hb_000173_180 Hb_049453_010--Hb_000173_180 Hb_049453_010--Hb_004625_020 Hb_000339_060 Hb_000339_060 Hb_049453_010--Hb_000339_060 Hb_000188_040 Hb_000188_040 Hb_049453_010--Hb_000188_040 Hb_000991_060 Hb_000991_060 Hb_006252_070--Hb_000991_060 Hb_006252_070--Hb_000188_040 Hb_001454_350 Hb_001454_350 Hb_006252_070--Hb_001454_350 Hb_002014_130 Hb_002014_130 Hb_006252_070--Hb_002014_130 Hb_000291_240 Hb_000291_240 Hb_006252_070--Hb_000291_240 Hb_001268_290 Hb_001268_290 Hb_006386_010--Hb_001268_290 Hb_001019_030 Hb_001019_030 Hb_006386_010--Hb_001019_030 Hb_001410_080 Hb_001410_080 Hb_006386_010--Hb_001410_080 Hb_000910_030 Hb_000910_030 Hb_006386_010--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_006386_010--Hb_000344_030 Hb_001195_710 Hb_001195_710 Hb_006386_010--Hb_001195_710 Hb_002171_050--Hb_004625_020 Hb_004917_020 Hb_004917_020 Hb_002171_050--Hb_004917_020 Hb_005614_020 Hb_005614_020 Hb_002171_050--Hb_005614_020 Hb_133492_010 Hb_133492_010 Hb_002171_050--Hb_133492_010 Hb_002499_030 Hb_002499_030 Hb_002171_050--Hb_002499_030 Hb_004625_020--Hb_133492_010 Hb_180980_010 Hb_180980_010 Hb_004625_020--Hb_180980_010 Hb_005183_070 Hb_005183_070 Hb_004625_020--Hb_005183_070 Hb_142056_010 Hb_142056_010 Hb_004625_020--Hb_142056_010 Hb_000137_050 Hb_000137_050 Hb_004625_020--Hb_000137_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.09797 1.6706 19.644 0.286787 0.245078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0574767 0 0 0.929469 6.05613

CAGE analysis