Hb_000020_190

Information

Type -
Description -
Location Contig20: 343212-345790
Sequence    

Annotation

kegg
ID rcu:RCOM_0452240
description hypothetical protein
nr
ID XP_002531564.1
description hypothetical protein RCOM_0452240 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZZ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0452240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20169: 343082-345740 , PASA_asmbl_20170: 344002-344441 , PASA_asmbl_20172: 343864-343970 , PASA_asmbl_20173: 343299-343580
cDNA
(Sanger)
(ID:Location)		 042_O18.ab1: 343082-345152

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_190 0.0 - - hypothetical protein RCOM_0452240 [Ricinus communis]
2 Hb_006922_100 0.0632536896 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
3 Hb_001124_160 0.0650237929 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
4 Hb_007075_040 0.0675778034 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
5 Hb_005539_220 0.0693669509 - - spermidine synthase 1, putative [Ricinus communis]
6 Hb_000630_050 0.0713997022 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000915_020 0.0722481579 - - unnamed protein product [Vitis vinifera]
8 Hb_004055_030 0.074955762 - - casein kinase, putative [Ricinus communis]
9 Hb_062135_030 0.075960727 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
10 Hb_008246_040 0.0767157857 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
11 Hb_007477_080 0.0780148851 - - conserved hypothetical protein [Ricinus communis]
12 Hb_023480_010 0.0788016219 - - cellular nucleic acid binding protein, putative [Ricinus communis]
13 Hb_004310_130 0.0794256232 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
14 Hb_000498_010 0.0795763976 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000699_140 0.080122657 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
16 Hb_001862_190 0.0808752657 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
17 Hb_005663_060 0.0809970782 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
18 Hb_002835_370 0.0813517189 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
19 Hb_009467_060 0.0814495318 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
20 Hb_000544_090 0.0828172481 - - PREDICTED: golgin candidate 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000020_190 Hb_000020_190 Hb_006922_100 Hb_006922_100 Hb_000020_190--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_000020_190--Hb_001124_160 Hb_007075_040 Hb_007075_040 Hb_000020_190--Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_000020_190--Hb_005539_220 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_005663_060 Hb_005663_060 Hb_006922_100--Hb_005663_060 Hb_004055_030 Hb_004055_030 Hb_006922_100--Hb_004055_030 Hb_001862_190 Hb_001862_190 Hb_006922_100--Hb_001862_190 Hb_007441_120 Hb_007441_120 Hb_006922_100--Hb_007441_120 Hb_001199_020 Hb_001199_020 Hb_006922_100--Hb_001199_020 Hb_001124_160--Hb_004055_030 Hb_062135_030 Hb_062135_030 Hb_001124_160--Hb_062135_030 Hb_000166_110 Hb_000166_110 Hb_001124_160--Hb_000166_110 Hb_002374_050 Hb_002374_050 Hb_001124_160--Hb_002374_050 Hb_004310_130 Hb_004310_130 Hb_001124_160--Hb_004310_130 Hb_007075_040--Hb_005539_220 Hb_000230_560 Hb_000230_560 Hb_007075_040--Hb_000230_560 Hb_003665_060 Hb_003665_060 Hb_007075_040--Hb_003665_060 Hb_156973_010 Hb_156973_010 Hb_007075_040--Hb_156973_010 Hb_000883_020 Hb_000883_020 Hb_007075_040--Hb_000883_020 Hb_000789_060 Hb_000789_060 Hb_005539_220--Hb_000789_060 Hb_000230_200 Hb_000230_200 Hb_005539_220--Hb_000230_200 Hb_005539_220--Hb_000230_560 Hb_008246_040 Hb_008246_040 Hb_005539_220--Hb_008246_040 Hb_000808_280 Hb_000808_280 Hb_000630_050--Hb_000808_280 Hb_106724_020 Hb_106724_020 Hb_000630_050--Hb_106724_020 Hb_000085_160 Hb_000085_160 Hb_000630_050--Hb_000085_160 Hb_006827_020 Hb_006827_020 Hb_000630_050--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000630_050--Hb_007317_110 Hb_000011_200 Hb_000011_200 Hb_000630_050--Hb_000011_200 Hb_000915_020--Hb_008246_040 Hb_001409_020 Hb_001409_020 Hb_000915_020--Hb_001409_020 Hb_014497_050 Hb_014497_050 Hb_000915_020--Hb_014497_050 Hb_011671_430 Hb_011671_430 Hb_000915_020--Hb_011671_430 Hb_000308_030 Hb_000308_030 Hb_000915_020--Hb_000308_030 Hb_005993_050 Hb_005993_050 Hb_000915_020--Hb_005993_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.7338 41.579 40.5322 40.041 52.2525 79.999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.8023 46.3289 63.7064 40.9165 40.1161

CAGE analysis