Hb_000021_040

Information

Type -
Description -
Location Contig21: 121414-136961
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05650g
description POPTRDRAFT_576360; Villin 2 family protein
nr
ID XP_011033340.1
description PREDICTED: villin-3-like isoform X1 [Populus euphratica]
swissprot
ID O81644
description Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2
trembl
ID B9II82
description Villin 2 family protein OS=Populus trichocarpa GN=POPTR_0016s05650g PE=4 SV=1
Gene Ontology
ID GO:0051015
description villin-3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21715: 121738-137121 , PASA_asmbl_21716: 135304-135684 , PASA_asmbl_21717: 133753-133911 , PASA_asmbl_21718: 129252-129427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000021_040 0.0 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
2 Hb_022250_110 0.0801613488 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
3 Hb_000037_110 0.0833345199 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
4 Hb_000768_190 0.0867690102 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
5 Hb_000343_190 0.089222177 - - PREDICTED: coatomer subunit beta'-2 isoform X1 [Jatropha curcas]
6 Hb_000209_070 0.0918510052 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
7 Hb_001473_090 0.0924515052 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
8 Hb_003847_120 0.09413632 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000107_530 0.0945414176 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_000347_130 0.0962259858 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
11 Hb_002255_050 0.0974469762 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_000029_320 0.0974587307 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
13 Hb_000465_170 0.099005166 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
14 Hb_002070_070 0.1016766822 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000264_010 0.1025469647 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
16 Hb_007426_150 0.1029024003 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
17 Hb_003018_160 0.1032115529 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
18 Hb_000365_140 0.1050569249 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
19 Hb_000441_180 0.1051727776 - - Early endosome antigen, putative [Ricinus communis]
20 Hb_064903_010 0.1054547291 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]

Gene co-expression network

sample Hb_000021_040 Hb_000021_040 Hb_022250_110 Hb_022250_110 Hb_000021_040--Hb_022250_110 Hb_000037_110 Hb_000037_110 Hb_000021_040--Hb_000037_110 Hb_000768_190 Hb_000768_190 Hb_000021_040--Hb_000768_190 Hb_000343_190 Hb_000343_190 Hb_000021_040--Hb_000343_190 Hb_000209_070 Hb_000209_070 Hb_000021_040--Hb_000209_070 Hb_001473_090 Hb_001473_090 Hb_000021_040--Hb_001473_090 Hb_000329_490 Hb_000329_490 Hb_022250_110--Hb_000329_490 Hb_022250_110--Hb_000209_070 Hb_000029_320 Hb_000029_320 Hb_022250_110--Hb_000029_320 Hb_078477_040 Hb_078477_040 Hb_022250_110--Hb_078477_040 Hb_003018_160 Hb_003018_160 Hb_022250_110--Hb_003018_160 Hb_006002_030 Hb_006002_030 Hb_022250_110--Hb_006002_030 Hb_000037_110--Hb_000768_190 Hb_008595_010 Hb_008595_010 Hb_000037_110--Hb_008595_010 Hb_000037_110--Hb_022250_110 Hb_000037_110--Hb_000029_320 Hb_002070_070 Hb_002070_070 Hb_000037_110--Hb_002070_070 Hb_064903_010 Hb_064903_010 Hb_000768_190--Hb_064903_010 Hb_003544_100 Hb_003544_100 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_000768_190--Hb_008595_010 Hb_006915_060 Hb_006915_060 Hb_000768_190--Hb_006915_060 Hb_000343_190--Hb_000768_190 Hb_005211_100 Hb_005211_100 Hb_000343_190--Hb_005211_100 Hb_009535_020 Hb_009535_020 Hb_000343_190--Hb_009535_020 Hb_004767_090 Hb_004767_090 Hb_000343_190--Hb_004767_090 Hb_000059_150 Hb_000059_150 Hb_000343_190--Hb_000059_150 Hb_000209_070--Hb_001473_090 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_001675_070 Hb_001675_070 Hb_000209_070--Hb_001675_070 Hb_000209_070--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_000209_070--Hb_003464_020 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.889 43.7708 26.9693 40.4257 104.227 91.6097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2701 13.5787 41.5078 32.321 25.9648

CAGE analysis