Hb_000022_020

Information

Type -
Description -
Location Contig22: 46375-52209
Sequence    

Annotation

kegg
ID cic:CICLE_v10020565mg
description hypothetical protein
nr
ID XP_006441401.1
description hypothetical protein CICLE_v10020565mg [Citrus clementina]
swissprot
ID Q9NZC7
description WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1
trembl
ID V4TXQ2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020565mg PE=3 SV=1
Gene Ontology
ID GO:0016630
description retinol dehydrogenase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22603: 46241-78451 , PASA_asmbl_22606: 48660-48975
cDNA
(Sanger)
(ID:Location)		 014_H23.ab1: 46241-52206

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_020 0.0 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
2 Hb_002414_050 0.0628565299 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
3 Hb_000830_030 0.0691016513 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
4 Hb_000170_090 0.070203627 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
5 Hb_004452_110 0.0732183617 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
6 Hb_001662_100 0.075993882 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
7 Hb_000345_160 0.0811559525 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
8 Hb_105328_020 0.0817342051 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
9 Hb_000110_190 0.082374148 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
10 Hb_002073_190 0.0833979588 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
11 Hb_009569_040 0.0835987908 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
12 Hb_008484_060 0.0846989524 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
13 Hb_003544_160 0.0850542411 - - -
14 Hb_012340_070 0.0852568837 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
15 Hb_000238_030 0.0854935836 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_002883_030 0.0866287134 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
17 Hb_032050_040 0.0869416509 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
18 Hb_007919_100 0.0870149853 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
19 Hb_000521_250 0.0877027896 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
20 Hb_000163_090 0.0878132266 - - gamma-tubulin complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_000022_020 Hb_000022_020 Hb_002414_050 Hb_002414_050 Hb_000022_020--Hb_002414_050 Hb_000830_030 Hb_000830_030 Hb_000022_020--Hb_000830_030 Hb_000170_090 Hb_000170_090 Hb_000022_020--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000022_020--Hb_004452_110 Hb_001662_100 Hb_001662_100 Hb_000022_020--Hb_001662_100 Hb_000345_160 Hb_000345_160 Hb_000022_020--Hb_000345_160 Hb_002414_050--Hb_001662_100 Hb_003544_160 Hb_003544_160 Hb_002414_050--Hb_003544_160 Hb_003517_040 Hb_003517_040 Hb_002414_050--Hb_003517_040 Hb_002414_050--Hb_004452_110 Hb_056691_060 Hb_056691_060 Hb_002414_050--Hb_056691_060 Hb_000156_010 Hb_000156_010 Hb_000830_030--Hb_000156_010 Hb_008484_060 Hb_008484_060 Hb_000830_030--Hb_008484_060 Hb_004109_080 Hb_004109_080 Hb_000830_030--Hb_004109_080 Hb_002785_050 Hb_002785_050 Hb_000830_030--Hb_002785_050 Hb_000830_030--Hb_056691_060 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_000170_090--Hb_001377_310 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_013399_020 Hb_013399_020 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000170_090--Hb_000345_160 Hb_004452_110--Hb_000345_160 Hb_004452_110--Hb_000976_140 Hb_000300_270 Hb_000300_270 Hb_004452_110--Hb_000300_270 Hb_002046_160 Hb_002046_160 Hb_004452_110--Hb_002046_160 Hb_005730_040 Hb_005730_040 Hb_004452_110--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_004452_110--Hb_000313_220 Hb_009569_040 Hb_009569_040 Hb_001662_100--Hb_009569_040 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_001662_100--Hb_003544_160 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_004037_020 Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.7537 8.51913 10.3307 17.338 10.158 17.057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0082 7.34077 7.11422 12.7196 15.1679

CAGE analysis