Hb_000022_250

Information

Type -
Description -
Location Contig22: 353562-355643
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26090g
description POPTRDRAFT_763405; pentatricopeptide repeat-containing family protein
nr
ID XP_012077465.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
swissprot
ID P0C898
description Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
trembl
ID A0A067KGY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07799 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22627: 354227-354386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_250 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
2 Hb_002810_020 0.0710296216 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
3 Hb_007951_050 0.0718968012 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000554_020 0.0757612777 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
5 Hb_001159_100 0.0771850267 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
6 Hb_010172_050 0.0772235769 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
7 Hb_001488_330 0.07850982 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
8 Hb_003266_130 0.0797892219 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
9 Hb_034585_060 0.0822696649 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
10 Hb_000406_220 0.0825232049 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
11 Hb_001258_040 0.0847478353 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
12 Hb_006332_020 0.0851281039 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
13 Hb_001507_020 0.0867502572 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
14 Hb_000457_150 0.086875558 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
15 Hb_178968_110 0.0879693029 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
16 Hb_000000_250 0.0880763299 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
17 Hb_029584_130 0.0885835176 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
18 Hb_002496_030 0.0888158267 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
19 Hb_000421_260 0.0914494278 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
20 Hb_000776_110 0.091741732 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000022_250 Hb_000022_250 Hb_002810_020 Hb_002810_020 Hb_000022_250--Hb_002810_020 Hb_007951_050 Hb_007951_050 Hb_000022_250--Hb_007951_050 Hb_000554_020 Hb_000554_020 Hb_000022_250--Hb_000554_020 Hb_001159_100 Hb_001159_100 Hb_000022_250--Hb_001159_100 Hb_010172_050 Hb_010172_050 Hb_000022_250--Hb_010172_050 Hb_001488_330 Hb_001488_330 Hb_000022_250--Hb_001488_330 Hb_011161_010 Hb_011161_010 Hb_002810_020--Hb_011161_010 Hb_000406_220 Hb_000406_220 Hb_002810_020--Hb_000406_220 Hb_181235_010 Hb_181235_010 Hb_002810_020--Hb_181235_010 Hb_002154_030 Hb_002154_030 Hb_002810_020--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_002810_020--Hb_002477_030 Hb_000421_260 Hb_000421_260 Hb_007951_050--Hb_000421_260 Hb_000754_060 Hb_000754_060 Hb_007951_050--Hb_000754_060 Hb_002496_030 Hb_002496_030 Hb_007951_050--Hb_002496_030 Hb_007951_050--Hb_001159_100 Hb_015306_020 Hb_015306_020 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290 Hb_029584_130 Hb_029584_130 Hb_001159_100--Hb_029584_130 Hb_000776_110 Hb_000776_110 Hb_001159_100--Hb_000776_110 Hb_001159_100--Hb_002496_030 Hb_000427_050 Hb_000427_050 Hb_001159_100--Hb_000427_050 Hb_016901_010 Hb_016901_010 Hb_010172_050--Hb_016901_010 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_003266_130 Hb_003266_130 Hb_010172_050--Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_010172_050--Hb_178968_110 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140 Hb_001488_330--Hb_006332_020 Hb_000977_070 Hb_000977_070 Hb_001488_330--Hb_000977_070 Hb_001488_330--Hb_000554_020 Hb_001488_330--Hb_000032_290 Hb_004600_040 Hb_004600_040 Hb_001488_330--Hb_004600_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51835 2.28921 0.830237 0.882847 2.65626 4.33675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52563 4.50107 4.86875 1.71575 1.68906

CAGE analysis