Hb_000022_280

Information

Type -
Description -
Location Contig22: 404293-408586
Sequence    

Annotation

kegg
ID rcu:RCOM_0803380
description hypothetical protein
nr
ID XP_012077462.1
description PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KR10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07795 PE=4 SV=1
Gene Ontology
ID GO:0006342
description golgin subfamily a member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22629: 404253-408396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_280 0.0 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
2 Hb_004129_110 0.0619671071 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
3 Hb_000300_170 0.066536927 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
4 Hb_010174_170 0.0995842092 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
5 Hb_166009_010 0.1065883818 - - carbonyl reductase, putative [Ricinus communis]
6 Hb_000009_130 0.1174446999 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
7 Hb_005489_120 0.1175613348 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
8 Hb_003376_300 0.1240377557 - - Aquaporin PIP2.2, putative [Ricinus communis]
9 Hb_002110_060 0.1369838503 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
10 Hb_001856_160 0.1371599365 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001053_110 0.1386679806 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
12 Hb_010164_020 0.1393434314 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
13 Hb_003788_010 0.1409280314 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
14 Hb_000317_230 0.1419658529 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
15 Hb_008554_090 0.1430805161 - - zinc finger protein, putative [Ricinus communis]
16 Hb_001329_110 0.1443644706 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
17 Hb_039496_010 0.1452682103 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
18 Hb_002003_010 0.1454254251 - - hypothetical protein JCGZ_15062 [Jatropha curcas]
19 Hb_003266_060 0.1455916998 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
20 Hb_010519_020 0.146049863 - - hypothetical protein JCGZ_19028 [Jatropha curcas]

Gene co-expression network

sample Hb_000022_280 Hb_000022_280 Hb_004129_110 Hb_004129_110 Hb_000022_280--Hb_004129_110 Hb_000300_170 Hb_000300_170 Hb_000022_280--Hb_000300_170 Hb_010174_170 Hb_010174_170 Hb_000022_280--Hb_010174_170 Hb_166009_010 Hb_166009_010 Hb_000022_280--Hb_166009_010 Hb_000009_130 Hb_000009_130 Hb_000022_280--Hb_000009_130 Hb_005489_120 Hb_005489_120 Hb_000022_280--Hb_005489_120 Hb_004129_110--Hb_166009_010 Hb_004129_110--Hb_000009_130 Hb_004129_110--Hb_010174_170 Hb_004129_110--Hb_000300_170 Hb_003376_300 Hb_003376_300 Hb_004129_110--Hb_003376_300 Hb_000300_170--Hb_005489_120 Hb_001053_110 Hb_001053_110 Hb_000300_170--Hb_001053_110 Hb_007313_010 Hb_007313_010 Hb_000300_170--Hb_007313_010 Hb_001856_160 Hb_001856_160 Hb_000300_170--Hb_001856_160 Hb_001723_070 Hb_001723_070 Hb_010174_170--Hb_001723_070 Hb_010174_170--Hb_000009_130 Hb_010519_020 Hb_010519_020 Hb_010174_170--Hb_010519_020 Hb_001221_480 Hb_001221_480 Hb_010174_170--Hb_001221_480 Hb_166009_010--Hb_000009_130 Hb_039022_020 Hb_039022_020 Hb_166009_010--Hb_039022_020 Hb_011472_020 Hb_011472_020 Hb_166009_010--Hb_011472_020 Hb_166009_010--Hb_003376_300 Hb_000009_130--Hb_011472_020 Hb_000009_130--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_000009_130--Hb_001421_010 Hb_005489_120--Hb_001053_110 Hb_000676_170 Hb_000676_170 Hb_005489_120--Hb_000676_170 Hb_005489_120--Hb_001856_160 Hb_012787_050 Hb_012787_050 Hb_005489_120--Hb_012787_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.188171 16.2729 14.0479 21.7544 0.0229422 0.035685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0531668 0 0.0265836 37.1924 3.2012

CAGE analysis