Hb_000023_090

Information

Type -
Description -
Location Contig23: 200941-207502
Sequence    

Annotation

kegg
ID rcu:RCOM_0865750
description mak, putative (EC:2.7.11.23)
nr
ID XP_002519870.1
description mak, putative [Ricinus communis]
swissprot
ID Q6Z8C8
description Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica GN=CDKF-4 PE=2 SV=1
trembl
ID B9S1K5
description Mak, putative OS=Ricinus communis GN=RCOM_0865750 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cyclin-dependent kinase f-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23934: 201086-207561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_090 0.0 - - mak, putative [Ricinus communis]
2 Hb_002005_020 0.0717260459 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004218_110 0.0794955818 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
4 Hb_148113_010 0.0828464783 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
5 Hb_000477_060 0.0846832297 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
6 Hb_000363_360 0.0883548093 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
7 Hb_003697_040 0.0890257162 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
8 Hb_000985_060 0.090359066 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
9 Hb_000291_080 0.0926624789 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
10 Hb_000635_150 0.0932302559 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
11 Hb_006420_100 0.0941875946 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
12 Hb_086639_030 0.0947663548 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_019654_030 0.0954322154 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
14 Hb_000161_060 0.095558742 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
15 Hb_000976_410 0.0959272519 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
16 Hb_001663_050 0.0972851346 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
17 Hb_005490_030 0.0973291694 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
18 Hb_004607_050 0.0975245618 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
19 Hb_006429_010 0.0996131393 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
20 Hb_000108_190 0.1005908671 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000023_090 Hb_000023_090 Hb_002005_020 Hb_002005_020 Hb_000023_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000023_090--Hb_004218_110 Hb_148113_010 Hb_148113_010 Hb_000023_090--Hb_148113_010 Hb_000477_060 Hb_000477_060 Hb_000023_090--Hb_000477_060 Hb_000363_360 Hb_000363_360 Hb_000023_090--Hb_000363_360 Hb_003697_040 Hb_003697_040 Hb_000023_090--Hb_003697_040 Hb_002005_020--Hb_004218_110 Hb_002759_060 Hb_002759_060 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_000567_120 Hb_000567_120 Hb_002005_020--Hb_000567_120 Hb_001519_050 Hb_001519_050 Hb_002005_020--Hb_001519_050 Hb_004218_110--Hb_002759_060 Hb_025240_040 Hb_025240_040 Hb_004218_110--Hb_025240_040 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_005488_200 Hb_005488_200 Hb_148113_010--Hb_005488_200 Hb_000072_180 Hb_000072_180 Hb_148113_010--Hb_000072_180 Hb_000046_350 Hb_000046_350 Hb_148113_010--Hb_000046_350 Hb_028515_010 Hb_028515_010 Hb_148113_010--Hb_028515_010 Hb_000120_020 Hb_000120_020 Hb_148113_010--Hb_000120_020 Hb_000477_060--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000477_060--Hb_003605_090 Hb_000477_060--Hb_000363_360 Hb_000116_270 Hb_000116_270 Hb_000477_060--Hb_000116_270 Hb_004934_100 Hb_004934_100 Hb_000477_060--Hb_004934_100 Hb_000749_220 Hb_000749_220 Hb_000477_060--Hb_000749_220 Hb_000985_060 Hb_000985_060 Hb_000363_360--Hb_000985_060 Hb_000363_360--Hb_003697_040 Hb_000479_190 Hb_000479_190 Hb_000363_360--Hb_000479_190 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.2394 47.186 21.5625 101.13 68.5422 87.8702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.322 140.581 177.423 111.3 71.2704

CAGE analysis