Hb_000023_110

Information

Type -
Description -
Location Contig23: 293653-299218
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01380g
description dehydration-responsive family protein
nr
ID XP_012075070.1
description PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
swissprot
ID Q9C6S7
description Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=2 SV=1
trembl
ID A9PF07
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23936: 293662-299186 , PASA_asmbl_23937: 293662-298229
cDNA
(Sanger)
(ID:Location)		 051_D21.ab1: 293662-293956

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_110 0.0 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
2 Hb_000049_270 0.1011599092 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
3 Hb_003408_010 0.1194733369 - - fructokinase [Manihot esculenta]
4 Hb_000327_360 0.1211107664 - - unnamed protein product [Coffea canephora]
5 Hb_012807_150 0.1233025801 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
6 Hb_003606_050 0.1236912497 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
7 Hb_031284_030 0.1237744346 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006570_090 0.1285969285 - - tubulin beta chain, putative [Ricinus communis]
9 Hb_000932_050 0.131571018 - - annexin [Manihot esculenta]
10 Hb_001450_040 0.1332610364 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
11 Hb_003728_110 0.1363776807 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
12 Hb_000008_200 0.1365278564 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
13 Hb_007101_260 0.1369949672 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
14 Hb_006351_020 0.1388082297 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
15 Hb_189003_070 0.1391326796 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
16 Hb_064546_010 0.1393743575 - - PREDICTED: peroxidase 3 [Jatropha curcas]
17 Hb_006889_030 0.1409270232 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
18 Hb_000025_160 0.1411710791 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
19 Hb_000193_340 0.1417514863 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
20 Hb_004007_070 0.1417800535 - - adenylsulfate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000023_110 Hb_000023_110 Hb_000049_270 Hb_000049_270 Hb_000023_110--Hb_000049_270 Hb_003408_010 Hb_003408_010 Hb_000023_110--Hb_003408_010 Hb_000327_360 Hb_000327_360 Hb_000023_110--Hb_000327_360 Hb_012807_150 Hb_012807_150 Hb_000023_110--Hb_012807_150 Hb_003606_050 Hb_003606_050 Hb_000023_110--Hb_003606_050 Hb_031284_030 Hb_031284_030 Hb_000023_110--Hb_031284_030 Hb_006570_090 Hb_006570_090 Hb_000049_270--Hb_006570_090 Hb_004007_070 Hb_004007_070 Hb_000049_270--Hb_004007_070 Hb_000098_170 Hb_000098_170 Hb_000049_270--Hb_000098_170 Hb_000049_270--Hb_012807_150 Hb_006889_030 Hb_006889_030 Hb_000049_270--Hb_006889_030 Hb_000932_050 Hb_000932_050 Hb_003408_010--Hb_000932_050 Hb_001450_040 Hb_001450_040 Hb_003408_010--Hb_001450_040 Hb_001401_040 Hb_001401_040 Hb_003408_010--Hb_001401_040 Hb_000108_240 Hb_000108_240 Hb_003408_010--Hb_000108_240 Hb_008725_080 Hb_008725_080 Hb_003408_010--Hb_008725_080 Hb_000327_360--Hb_012807_150 Hb_007101_260 Hb_007101_260 Hb_000327_360--Hb_007101_260 Hb_005074_040 Hb_005074_040 Hb_000327_360--Hb_005074_040 Hb_006120_060 Hb_006120_060 Hb_000327_360--Hb_006120_060 Hb_000283_140 Hb_000283_140 Hb_000327_360--Hb_000283_140 Hb_000808_150 Hb_000808_150 Hb_000327_360--Hb_000808_150 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060 Hb_000735_060 Hb_000735_060 Hb_003606_050--Hb_000735_060 Hb_005568_020 Hb_005568_020 Hb_003606_050--Hb_005568_020 Hb_000008_200 Hb_000008_200 Hb_003606_050--Hb_000008_200 Hb_001085_190 Hb_001085_190 Hb_003606_050--Hb_001085_190 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_001936_180 Hb_001936_180 Hb_003606_050--Hb_001936_180 Hb_006351_020 Hb_006351_020 Hb_031284_030--Hb_006351_020 Hb_031284_030--Hb_001450_040 Hb_000152_190 Hb_000152_190 Hb_031284_030--Hb_000152_190 Hb_031284_030--Hb_006889_030 Hb_031284_030--Hb_000327_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.33972 13.3266 58.2254 101.967 2.44138 5.33535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64409 3.59465 8.14948 17.4984 36.0519

CAGE analysis