Hb_000023_140

Information

Type -
Description -
Location Contig23: 365130-366434
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01460g
description Cadmium induced protein AS8
nr
ID XP_012075074.1
description PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
swissprot
ID P42735
description Cadmium-induced protein AS8 OS=Arabidopsis thaliana GN=At4g19070 PE=2 SV=1
trembl
ID A0A067KU95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10812 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23940: 349785-366389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_140 0.0 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
2 Hb_002616_050 0.0590926811 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
3 Hb_005754_060 0.0741720027 - - conserved hypothetical protein [Ricinus communis]
4 Hb_071736_010 0.0743038623 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
5 Hb_001855_010 0.0768133536 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
6 Hb_005063_040 0.0792302962 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
7 Hb_006788_070 0.0792361244 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
8 Hb_003005_020 0.0868205999 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
9 Hb_000172_370 0.0878775981 - - -
10 Hb_000363_500 0.0895510527 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_009048_040 0.0904865337 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
12 Hb_004072_020 0.0910670657 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
13 Hb_000103_140 0.0912945253 - - ribosomal protein S3a [Populus trichocarpa]
14 Hb_063134_010 0.0912991416 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
15 Hb_002112_040 0.0913519462 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
16 Hb_183086_060 0.0923027819 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
17 Hb_000175_070 0.0936527021 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
18 Hb_029510_140 0.094041004 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
19 Hb_148912_010 0.0942990038 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011310_070 0.0944147082 - - ADP,ATP carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000023_140 Hb_000023_140 Hb_002616_050 Hb_002616_050 Hb_000023_140--Hb_002616_050 Hb_005754_060 Hb_005754_060 Hb_000023_140--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_000023_140--Hb_071736_010 Hb_001855_010 Hb_001855_010 Hb_000023_140--Hb_001855_010 Hb_005063_040 Hb_005063_040 Hb_000023_140--Hb_005063_040 Hb_006788_070 Hb_006788_070 Hb_000023_140--Hb_006788_070 Hb_000363_500 Hb_000363_500 Hb_002616_050--Hb_000363_500 Hb_004072_020 Hb_004072_020 Hb_002616_050--Hb_004072_020 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_009048_040 Hb_009048_040 Hb_005754_060--Hb_009048_040 Hb_005754_060--Hb_071736_010 Hb_005883_050 Hb_005883_050 Hb_005754_060--Hb_005883_050 Hb_000395_170 Hb_000395_170 Hb_005754_060--Hb_000395_170 Hb_001454_210 Hb_001454_210 Hb_005754_060--Hb_001454_210 Hb_071736_010--Hb_005883_050 Hb_001266_080 Hb_001266_080 Hb_071736_010--Hb_001266_080 Hb_071736_010--Hb_002616_050 Hb_071736_010--Hb_001855_010 Hb_001135_160 Hb_001135_160 Hb_001855_010--Hb_001135_160 Hb_014568_030 Hb_014568_030 Hb_001855_010--Hb_014568_030 Hb_001855_010--Hb_005063_040 Hb_001855_010--Hb_005754_060 Hb_076787_010 Hb_076787_010 Hb_005063_040--Hb_076787_010 Hb_007101_100 Hb_007101_100 Hb_005063_040--Hb_007101_100 Hb_028872_140 Hb_028872_140 Hb_005063_040--Hb_028872_140 Hb_003005_020 Hb_003005_020 Hb_005063_040--Hb_003005_020 Hb_001030_120 Hb_001030_120 Hb_005063_040--Hb_001030_120 Hb_000175_070 Hb_000175_070 Hb_006788_070--Hb_000175_070 Hb_011310_070 Hb_011310_070 Hb_006788_070--Hb_011310_070 Hb_009558_020 Hb_009558_020 Hb_006788_070--Hb_009558_020 Hb_006788_070--Hb_005063_040 Hb_007193_100 Hb_007193_100 Hb_006788_070--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.6053 5.71476 12.9508 16.7561 31.2329 58.3902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.8747 31.366 40.2632 12.1879 12.2215

CAGE analysis