Hb_000023_200

Information

Type -
Description -
Location Contig23: 448014-455636
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02910g
description POPTRDRAFT_1106291; hypothetical protein
nr
ID XP_002324930.1
description hypothetical protein POPTR_0018s02910g [Populus trichocarpa]
swissprot
ID O81772
description Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=3 SV=1
trembl
ID B9IL94
description Peroxidase OS=Populus trichocarpa GN=PRX89 PE=2 SV=1
Gene Ontology
ID GO:0004601
description class iii peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_200 0.0 - - hypothetical protein POPTR_0018s02910g [Populus trichocarpa]
2 Hb_054127_040 0.166170088 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
3 Hb_000023_230 0.1666341431 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
4 Hb_004046_040 0.1737381697 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
5 Hb_001776_090 0.1778844726 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
6 Hb_000698_030 0.1788893064 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
7 Hb_002045_040 0.180188388 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_000789_090 0.1822236606 - - hypothetical protein 17 [Hevea brasiliensis]
9 Hb_006096_040 0.1829878345 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
10 Hb_000123_230 0.1836956577 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001341_130 0.1848222851 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011381_060 0.1870796202 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
13 Hb_092115_010 0.188555992 - - -
14 Hb_002681_040 0.1898242173 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
15 Hb_000438_170 0.1904898355 - - -
16 Hb_007154_020 0.1905158943 - - -
17 Hb_001584_310 0.192445902 - - hypothetical protein POPTR_0013s00630g [Populus trichocarpa]
18 Hb_008175_040 0.1924859189 - - PREDICTED: sm-like protein LSM36B [Jatropha curcas]
19 Hb_000805_120 0.1929505667 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
20 Hb_004751_020 0.1934341828 - - PREDICTED: uncharacterized protein LOC105648266 [Jatropha curcas]

Gene co-expression network

sample Hb_000023_200 Hb_000023_200 Hb_054127_040 Hb_054127_040 Hb_000023_200--Hb_054127_040 Hb_000023_230 Hb_000023_230 Hb_000023_200--Hb_000023_230 Hb_004046_040 Hb_004046_040 Hb_000023_200--Hb_004046_040 Hb_001776_090 Hb_001776_090 Hb_000023_200--Hb_001776_090 Hb_000698_030 Hb_000698_030 Hb_000023_200--Hb_000698_030 Hb_002045_040 Hb_002045_040 Hb_000023_200--Hb_002045_040 Hb_034299_060 Hb_034299_060 Hb_054127_040--Hb_034299_060 Hb_010172_070 Hb_010172_070 Hb_054127_040--Hb_010172_070 Hb_000429_170 Hb_000429_170 Hb_054127_040--Hb_000429_170 Hb_001257_080 Hb_001257_080 Hb_054127_040--Hb_001257_080 Hb_000056_340 Hb_000056_340 Hb_054127_040--Hb_000056_340 Hb_044662_070 Hb_044662_070 Hb_054127_040--Hb_044662_070 Hb_023226_040 Hb_023226_040 Hb_000023_230--Hb_023226_040 Hb_000023_230--Hb_001257_080 Hb_003018_120 Hb_003018_120 Hb_000023_230--Hb_003018_120 Hb_002529_100 Hb_002529_100 Hb_000023_230--Hb_002529_100 Hb_004657_050 Hb_004657_050 Hb_000023_230--Hb_004657_050 Hb_004204_120 Hb_004204_120 Hb_000023_230--Hb_004204_120 Hb_006096_040 Hb_006096_040 Hb_004046_040--Hb_006096_040 Hb_006501_150 Hb_006501_150 Hb_004046_040--Hb_006501_150 Hb_005545_030 Hb_005545_030 Hb_004046_040--Hb_005545_030 Hb_000789_090 Hb_000789_090 Hb_004046_040--Hb_000789_090 Hb_002681_040 Hb_002681_040 Hb_004046_040--Hb_002681_040 Hb_001405_050 Hb_001405_050 Hb_004046_040--Hb_001405_050 Hb_001776_090--Hb_001405_050 Hb_001545_040 Hb_001545_040 Hb_001776_090--Hb_001545_040 Hb_007154_020 Hb_007154_020 Hb_001776_090--Hb_007154_020 Hb_001828_090 Hb_001828_090 Hb_001776_090--Hb_001828_090 Hb_011381_060 Hb_011381_060 Hb_001776_090--Hb_011381_060 Hb_001379_060 Hb_001379_060 Hb_001776_090--Hb_001379_060 Hb_001832_060 Hb_001832_060 Hb_000698_030--Hb_001832_060 Hb_001235_190 Hb_001235_190 Hb_000698_030--Hb_001235_190 Hb_000866_270 Hb_000866_270 Hb_000698_030--Hb_000866_270 Hb_028995_040 Hb_028995_040 Hb_000698_030--Hb_028995_040 Hb_000462_130 Hb_000462_130 Hb_000698_030--Hb_000462_130 Hb_001269_630 Hb_001269_630 Hb_000698_030--Hb_001269_630 Hb_002045_040--Hb_011381_060 Hb_000805_120 Hb_000805_120 Hb_002045_040--Hb_000805_120 Hb_145880_030 Hb_145880_030 Hb_002045_040--Hb_145880_030 Hb_000251_070 Hb_000251_070 Hb_002045_040--Hb_000251_070 Hb_010407_040 Hb_010407_040 Hb_002045_040--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_002045_040--Hb_002374_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60766 0.433425 0.648101 0.153836 1.24557 0.133591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73504 1.62251 0.483092 0.452582 0.161354

CAGE analysis