Hb_000023_220

Information

Type transcription factor
Description TF Family: C3H
Location Contig23: 459457-462763
Sequence    

Annotation

kegg
ID rcu:RCOM_0920370
description zinc finger protein, putative
nr
ID XP_012076392.1
description PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
swissprot
ID Q6K687
description Zinc finger CCCH domain-containing protein 18 OS=Oryza sativa subsp. japonica GN=Os02g0793000 PE=2 SV=1
trembl
ID A0A067KMH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07061 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger ccch domain-containing protein 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23952: 460335-462729 , PASA_asmbl_23953: 460335-461322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_220 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
2 Hb_000085_160 0.061603333 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
3 Hb_000193_190 0.0660619989 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
4 Hb_004117_130 0.067470893 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
5 Hb_000205_100 0.0754690185 - - PREDICTED: exportin-4 [Jatropha curcas]
6 Hb_000011_200 0.0761934803 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
7 Hb_106371_010 0.0782976441 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_003525_010 0.0795090964 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
9 Hb_000051_070 0.0796987834 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
10 Hb_000225_040 0.0819623628 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
11 Hb_003090_080 0.0819884753 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
12 Hb_007044_080 0.0820542614 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
13 Hb_002716_130 0.0821431762 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
14 Hb_008406_190 0.0824051137 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
15 Hb_002477_280 0.0827570099 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
16 Hb_040262_010 0.0833385031 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
17 Hb_002200_080 0.0842245803 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
18 Hb_000521_050 0.0845574688 - - PREDICTED: major facilitator superfamily domain-containing protein 12-like isoform X1 [Jatropha curcas]
19 Hb_001369_420 0.0845984913 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
20 Hb_000808_280 0.0848305116 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000023_220 Hb_000023_220 Hb_000085_160 Hb_000085_160 Hb_000023_220--Hb_000085_160 Hb_000193_190 Hb_000193_190 Hb_000023_220--Hb_000193_190 Hb_004117_130 Hb_004117_130 Hb_000023_220--Hb_004117_130 Hb_000205_100 Hb_000205_100 Hb_000023_220--Hb_000205_100 Hb_000011_200 Hb_000011_200 Hb_000023_220--Hb_000011_200 Hb_106371_010 Hb_106371_010 Hb_000023_220--Hb_106371_010 Hb_007317_110 Hb_007317_110 Hb_000085_160--Hb_007317_110 Hb_003525_010 Hb_003525_010 Hb_000085_160--Hb_003525_010 Hb_000085_160--Hb_000011_200 Hb_000630_050 Hb_000630_050 Hb_000085_160--Hb_000630_050 Hb_003665_060 Hb_003665_060 Hb_000085_160--Hb_003665_060 Hb_000010_330 Hb_000010_330 Hb_000085_160--Hb_000010_330 Hb_000193_190--Hb_000205_100 Hb_000193_190--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_000193_190--Hb_001946_010 Hb_000225_040 Hb_000225_040 Hb_000193_190--Hb_000225_040 Hb_007576_110 Hb_007576_110 Hb_000193_190--Hb_007576_110 Hb_011930_160 Hb_011930_160 Hb_000193_190--Hb_011930_160 Hb_002716_130 Hb_002716_130 Hb_004117_130--Hb_002716_130 Hb_020719_030 Hb_020719_030 Hb_004117_130--Hb_020719_030 Hb_000260_170 Hb_000260_170 Hb_004117_130--Hb_000260_170 Hb_000933_090 Hb_000933_090 Hb_004117_130--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_004117_130--Hb_007044_080 Hb_000205_100--Hb_001946_010 Hb_000205_100--Hb_000225_040 Hb_000613_050 Hb_000613_050 Hb_000205_100--Hb_000613_050 Hb_004689_050 Hb_004689_050 Hb_000205_100--Hb_004689_050 Hb_001178_070 Hb_001178_070 Hb_000205_100--Hb_001178_070 Hb_000011_200--Hb_000225_040 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_000011_200--Hb_007317_110 Hb_003090_080 Hb_003090_080 Hb_106371_010--Hb_003090_080 Hb_000160_040 Hb_000160_040 Hb_106371_010--Hb_000160_040 Hb_001790_020 Hb_001790_020 Hb_106371_010--Hb_001790_020 Hb_016898_010 Hb_016898_010 Hb_106371_010--Hb_016898_010 Hb_033834_060 Hb_033834_060 Hb_106371_010--Hb_033834_060 Hb_003952_150 Hb_003952_150 Hb_106371_010--Hb_003952_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6577 7.7587 5.53397 11.9702 21.5989 18.2078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5403 15.6859 11.822 14.7381 10.7995

CAGE analysis