Hb_000023_230

Information

Type -
Description -
Location Contig23: 464104-466859
Sequence    

Annotation

kegg
ID rcu:RCOM_0920380
description hypothetical protein
nr
ID XP_012076394.1
description PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KB87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07062 PE=4 SV=1
Gene Ontology
ID GO:0006261
description spindle and kinetochore-associated protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23954: 464190-466858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_230 0.0 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
2 Hb_023226_040 0.0610696888 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
3 Hb_001257_080 0.0832001424 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003018_120 0.0833380506 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
5 Hb_002529_100 0.0834766335 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
6 Hb_004657_050 0.0851189704 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
7 Hb_004204_120 0.085134467 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
8 Hb_011381_060 0.086383116 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
9 Hb_000798_030 0.0889846665 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
10 Hb_001404_100 0.0895108372 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
11 Hb_000866_270 0.0909531332 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
12 Hb_000041_080 0.0921900291 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
13 Hb_001235_190 0.0926334464 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
14 Hb_000698_030 0.0927834914 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
15 Hb_000494_020 0.0943398004 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
16 Hb_145880_030 0.0959375308 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
17 Hb_004994_170 0.0959823457 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
18 Hb_000056_340 0.0975620155 - - 60S ribosomal protein L34A [Hevea brasiliensis]
19 Hb_002007_060 0.0982198539 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
20 Hb_000805_120 0.0993842212 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000023_230 Hb_000023_230 Hb_023226_040 Hb_023226_040 Hb_000023_230--Hb_023226_040 Hb_001257_080 Hb_001257_080 Hb_000023_230--Hb_001257_080 Hb_003018_120 Hb_003018_120 Hb_000023_230--Hb_003018_120 Hb_002529_100 Hb_002529_100 Hb_000023_230--Hb_002529_100 Hb_004657_050 Hb_004657_050 Hb_000023_230--Hb_004657_050 Hb_004204_120 Hb_004204_120 Hb_000023_230--Hb_004204_120 Hb_002007_060 Hb_002007_060 Hb_023226_040--Hb_002007_060 Hb_000866_270 Hb_000866_270 Hb_023226_040--Hb_000866_270 Hb_023226_040--Hb_004657_050 Hb_000000_160 Hb_000000_160 Hb_023226_040--Hb_000000_160 Hb_028995_040 Hb_028995_040 Hb_023226_040--Hb_028995_040 Hb_002205_080 Hb_002205_080 Hb_001257_080--Hb_002205_080 Hb_007741_050 Hb_007741_050 Hb_001257_080--Hb_007741_050 Hb_007101_150 Hb_007101_150 Hb_001257_080--Hb_007101_150 Hb_001257_080--Hb_002529_100 Hb_022250_040 Hb_022250_040 Hb_001257_080--Hb_022250_040 Hb_000798_030 Hb_000798_030 Hb_001257_080--Hb_000798_030 Hb_002518_050 Hb_002518_050 Hb_003018_120--Hb_002518_050 Hb_011381_060 Hb_011381_060 Hb_003018_120--Hb_011381_060 Hb_003018_120--Hb_000798_030 Hb_001377_150 Hb_001377_150 Hb_003018_120--Hb_001377_150 Hb_003018_120--Hb_004204_120 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_002529_100--Hb_000798_030 Hb_000045_190 Hb_000045_190 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_004657_050--Hb_028995_040 Hb_011224_110 Hb_011224_110 Hb_004657_050--Hb_011224_110 Hb_004657_050--Hb_002007_060 Hb_004931_090 Hb_004931_090 Hb_004657_050--Hb_004931_090 Hb_004657_050--Hb_000866_270 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_070986_010 Hb_070986_010 Hb_004204_120--Hb_070986_010 Hb_000120_750 Hb_000120_750 Hb_004204_120--Hb_000120_750 Hb_004204_120--Hb_000798_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.4502 21.4096 27.2119 13.4371 42.4958 37.1021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.2733 78.2592 39.861 21.4349 8.84892

CAGE analysis