Hb_000023_250

Information

Type -
Description -
Location Contig23: 479233-479772
Sequence    

Annotation

kegg
ID rcu:RCOM_0920500
description hypothetical protein
nr
ID XP_012076396.1
description PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
swissprot
ID Q9M8L3
description VQ motif-containing protein 11 OS=Arabidopsis thaliana GN=VQ11 PE=1 SV=1
trembl
ID A0A067KEQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07064 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 036_N14.ab1: 479025-479815 , 053_B01.ab1: 479097-479787

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_250 0.0 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
2 Hb_000256_130 0.1415318706 - - hypothetical protein 21 [Hevea brasiliensis]
3 Hb_000976_280 0.1701494886 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
4 Hb_000364_040 0.1770438802 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
5 Hb_116349_040 0.19138195 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
6 Hb_005663_070 0.1962088936 - - dehydrin protein [Manihot esculenta]
7 Hb_006788_140 0.1983604379 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
8 Hb_003605_240 0.2014354193 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
9 Hb_000345_200 0.2026177957 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
10 Hb_009233_030 0.2043142725 - - protein binding protein, putative [Ricinus communis]
11 Hb_001699_230 0.2046164059 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
12 Hb_002701_220 0.204627899 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
13 Hb_001153_180 0.2072489784 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
14 Hb_000077_390 0.2079877559 transcription factor TF Family: ERF hypothetical protein POPTR_0019s13330g [Populus trichocarpa]
15 Hb_012107_010 0.2087437315 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
16 Hb_001944_020 0.2089107094 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
17 Hb_001959_120 0.2096279354 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
18 Hb_001511_190 0.2124962009 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
19 Hb_004724_210 0.2131852114 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000343_180 0.216535172 - - NDWp3 [Podospora anserina]

Gene co-expression network

sample Hb_000023_250 Hb_000023_250 Hb_000256_130 Hb_000256_130 Hb_000023_250--Hb_000256_130 Hb_000976_280 Hb_000976_280 Hb_000023_250--Hb_000976_280 Hb_000364_040 Hb_000364_040 Hb_000023_250--Hb_000364_040 Hb_116349_040 Hb_116349_040 Hb_000023_250--Hb_116349_040 Hb_005663_070 Hb_005663_070 Hb_000023_250--Hb_005663_070 Hb_006788_140 Hb_006788_140 Hb_000023_250--Hb_006788_140 Hb_000256_130--Hb_000364_040 Hb_000256_130--Hb_000976_280 Hb_012107_010 Hb_012107_010 Hb_000256_130--Hb_012107_010 Hb_000634_070 Hb_000634_070 Hb_000256_130--Hb_000634_070 Hb_000256_130--Hb_005663_070 Hb_000019_040 Hb_000019_040 Hb_000976_280--Hb_000019_040 Hb_001484_020 Hb_001484_020 Hb_000976_280--Hb_001484_020 Hb_000976_280--Hb_006788_140 Hb_003605_240 Hb_003605_240 Hb_000976_280--Hb_003605_240 Hb_013241_010 Hb_013241_010 Hb_000976_280--Hb_013241_010 Hb_000077_390 Hb_000077_390 Hb_000976_280--Hb_000077_390 Hb_000364_040--Hb_003605_240 Hb_000364_040--Hb_000976_280 Hb_000364_040--Hb_000077_390 Hb_015934_030 Hb_015934_030 Hb_000364_040--Hb_015934_030 Hb_011631_010 Hb_011631_010 Hb_000364_040--Hb_011631_010 Hb_008066_070 Hb_008066_070 Hb_116349_040--Hb_008066_070 Hb_007576_200 Hb_007576_200 Hb_116349_040--Hb_007576_200 Hb_006453_010 Hb_006453_010 Hb_116349_040--Hb_006453_010 Hb_006446_010 Hb_006446_010 Hb_116349_040--Hb_006446_010 Hb_001053_090 Hb_001053_090 Hb_116349_040--Hb_001053_090 Hb_171900_020 Hb_171900_020 Hb_005663_070--Hb_171900_020 Hb_006909_060 Hb_006909_060 Hb_005663_070--Hb_006909_060 Hb_004724_210 Hb_004724_210 Hb_005663_070--Hb_004724_210 Hb_001944_020 Hb_001944_020 Hb_005663_070--Hb_001944_020 Hb_001235_170 Hb_001235_170 Hb_005663_070--Hb_001235_170 Hb_005663_070--Hb_012107_010 Hb_006788_140--Hb_000019_040 Hb_000987_060 Hb_000987_060 Hb_006788_140--Hb_000987_060 Hb_189208_020 Hb_189208_020 Hb_006788_140--Hb_189208_020 Hb_003175_030 Hb_003175_030 Hb_006788_140--Hb_003175_030 Hb_002097_200 Hb_002097_200 Hb_006788_140--Hb_002097_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9908 98.4506 17 26.5549 1.01099 0.903988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9376 26.7478 22.4326 18.0531 18.235

CAGE analysis