Hb_000023_280

Information

Type -
Description -
Location Contig23: 510545-514089
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28210g
description POPTRDRAFT_562013; hypothetical protein
nr
ID XP_002309687.1
description hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
swissprot
ID Q6P011
description ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2 SV=1
trembl
ID B9HB78
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28210g PE=4 SV=1
Gene Ontology
ID GO:0005783
description er membrane protein complex subunit 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23960: 510576-514133
cDNA
(Sanger)
(ID:Location)		 028_M21.ab1: 513824-514061

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_280 0.0 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
2 Hb_010142_030 0.0684703565 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_003761_010 0.069012621 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_004143_040 0.0766689608 - - argininosuccinate lyase, putative [Ricinus communis]
5 Hb_000645_090 0.082394486 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001215_040 0.0828289497 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000116_410 0.0834658762 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
8 Hb_011485_070 0.0845084546 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
9 Hb_005054_290 0.084682005 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
10 Hb_005914_080 0.0872917162 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
11 Hb_004109_310 0.0881166688 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
12 Hb_000252_200 0.088358038 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003940_040 0.0887073771 - - conserved hypothetical protein [Ricinus communis]
14 Hb_155159_020 0.0918167871 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
15 Hb_001205_240 0.0936108361 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
16 Hb_028227_070 0.0939536268 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
17 Hb_000015_040 0.095231492 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
18 Hb_002685_110 0.0969665036 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
19 Hb_001584_120 0.0970297859 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
20 Hb_000185_030 0.0970468278 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000023_280 Hb_000023_280 Hb_010142_030 Hb_010142_030 Hb_000023_280--Hb_010142_030 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_001215_040 Hb_001215_040 Hb_000023_280--Hb_001215_040 Hb_000116_410 Hb_000116_410 Hb_000023_280--Hb_000116_410 Hb_003693_070 Hb_003693_070 Hb_010142_030--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_010142_030--Hb_000120_060 Hb_010142_030--Hb_000116_410 Hb_003940_040 Hb_003940_040 Hb_010142_030--Hb_003940_040 Hb_001635_090 Hb_001635_090 Hb_010142_030--Hb_001635_090 Hb_001205_240 Hb_001205_240 Hb_003761_010--Hb_001205_240 Hb_000185_030 Hb_000185_030 Hb_003761_010--Hb_000185_030 Hb_028285_010 Hb_028285_010 Hb_003761_010--Hb_028285_010 Hb_002205_110 Hb_002205_110 Hb_003761_010--Hb_002205_110 Hb_000028_370 Hb_000028_370 Hb_003761_010--Hb_000028_370 Hb_002232_410 Hb_002232_410 Hb_003761_010--Hb_002232_410 Hb_004143_040--Hb_000116_410 Hb_003373_030 Hb_003373_030 Hb_004143_040--Hb_003373_030 Hb_002662_020 Hb_002662_020 Hb_004143_040--Hb_002662_020 Hb_004143_040--Hb_003761_010 Hb_004143_040--Hb_001205_240 Hb_002481_080 Hb_002481_080 Hb_000645_090--Hb_002481_080 Hb_001377_510 Hb_001377_510 Hb_000645_090--Hb_001377_510 Hb_155159_020 Hb_155159_020 Hb_000645_090--Hb_155159_020 Hb_022115_020 Hb_022115_020 Hb_000645_090--Hb_022115_020 Hb_000477_060 Hb_000477_060 Hb_000645_090--Hb_000477_060 Hb_005188_080 Hb_005188_080 Hb_000645_090--Hb_005188_080 Hb_000312_080 Hb_000312_080 Hb_001215_040--Hb_000312_080 Hb_000175_540 Hb_000175_540 Hb_001215_040--Hb_000175_540 Hb_011344_120 Hb_011344_120 Hb_001215_040--Hb_011344_120 Hb_001653_020 Hb_001653_020 Hb_001215_040--Hb_001653_020 Hb_005365_030 Hb_005365_030 Hb_001215_040--Hb_005365_030 Hb_000116_410--Hb_001635_090 Hb_000191_150 Hb_000191_150 Hb_000116_410--Hb_000191_150 Hb_001178_070 Hb_001178_070 Hb_000116_410--Hb_001178_070 Hb_000116_410--Hb_028285_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.186 28.35 11.2489 37.1715 19.4137 36.0182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.435 35.5357 32.0879 39.2792 13.0103

CAGE analysis