Hb_000023_340

Information

Type -
Description -
Location Contig23: 555639-558870
Sequence    

Annotation

kegg
ID cic:CICLE_v10009999mg
description hypothetical protein
nr
ID XP_012065802.1
description PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
swissprot
ID Q96319
description Enhancer of rudimentary homolog OS=Arabidopsis thaliana GN=At5g10810 PE=3 SV=1
trembl
ID A0A0D2R6F3
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G119400 PE=4 SV=1
Gene Ontology
ID GO:0006221
description enhancer of rudimentary homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23972: 555493-558836
cDNA
(Sanger)
(ID:Location)		 038_H17.ab1: 555715-558836

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_340 0.0 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
2 Hb_000963_180 0.0593611524 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
3 Hb_006573_220 0.0762249008 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
4 Hb_000441_190 0.078680291 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
5 Hb_001141_030 0.0809774244 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
6 Hb_003632_010 0.087568306 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001842_040 0.0878659915 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
8 Hb_005731_170 0.0884592187 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
9 Hb_000086_070 0.0902750834 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
10 Hb_007100_030 0.090404503 - - 40S ribosomal protein S17B [Hevea brasiliensis]
11 Hb_001191_090 0.0907350734 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
12 Hb_001687_040 0.0908710783 - - actin-depolymerizing factor [Hevea brasiliensis]
13 Hb_001461_010 0.0913516003 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
14 Hb_000377_060 0.0916708201 - - ARF GTPase activator, putative [Ricinus communis]
15 Hb_029866_040 0.0920382455 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
16 Hb_001109_020 0.0924473808 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012779_100 0.0926145023 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001829_060 0.0928127822 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
19 Hb_007926_060 0.0934871883 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
20 Hb_000975_300 0.0936048545 - - Rab2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000023_340 Hb_000023_340 Hb_000963_180 Hb_000963_180 Hb_000023_340--Hb_000963_180 Hb_006573_220 Hb_006573_220 Hb_000023_340--Hb_006573_220 Hb_000441_190 Hb_000441_190 Hb_000023_340--Hb_000441_190 Hb_001141_030 Hb_001141_030 Hb_000023_340--Hb_001141_030 Hb_003632_010 Hb_003632_010 Hb_000023_340--Hb_003632_010 Hb_001842_040 Hb_001842_040 Hb_000023_340--Hb_001842_040 Hb_029866_070 Hb_029866_070 Hb_000963_180--Hb_029866_070 Hb_000046_110 Hb_000046_110 Hb_000963_180--Hb_000046_110 Hb_001461_010 Hb_001461_010 Hb_000963_180--Hb_001461_010 Hb_001829_060 Hb_001829_060 Hb_000963_180--Hb_001829_060 Hb_029866_040 Hb_029866_040 Hb_000963_180--Hb_029866_040 Hb_001191_090 Hb_001191_090 Hb_006573_220--Hb_001191_090 Hb_000329_330 Hb_000329_330 Hb_006573_220--Hb_000329_330 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_002097_060 Hb_002097_060 Hb_006573_220--Hb_002097_060 Hb_003376_030 Hb_003376_030 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_000441_190--Hb_001842_040 Hb_003893_050 Hb_003893_050 Hb_000441_190--Hb_003893_050 Hb_000283_110 Hb_000283_110 Hb_000441_190--Hb_000283_110 Hb_000441_190--Hb_001461_010 Hb_003994_040 Hb_003994_040 Hb_000441_190--Hb_003994_040 Hb_003203_040 Hb_003203_040 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_001143_080 Hb_001143_080 Hb_001141_030--Hb_001143_080 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_012753_160 Hb_012753_160 Hb_001141_030--Hb_012753_160 Hb_001141_030--Hb_003994_040 Hb_003632_010--Hb_000046_110 Hb_006117_070 Hb_006117_070 Hb_003632_010--Hb_006117_070 Hb_003632_010--Hb_001109_020 Hb_002027_210 Hb_002027_210 Hb_003632_010--Hb_002027_210 Hb_003632_010--Hb_003455_040 Hb_000377_060 Hb_000377_060 Hb_003632_010--Hb_000377_060 Hb_001842_040--Hb_001461_010 Hb_005278_020 Hb_005278_020 Hb_001842_040--Hb_005278_020 Hb_007100_030 Hb_007100_030 Hb_001842_040--Hb_007100_030 Hb_001842_040--Hb_000283_110 Hb_001842_040--Hb_003893_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.5069 20.3401 42.103 74.3961 42.486 97.6015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.105 216.443 185.891 48.3235 25.6101

CAGE analysis