Hb_000023_370

Information

Type -
Description -
Location Contig23: 566367-571031
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23976: 566770-567159 , PASA_asmbl_23978: 568353-568540 , PASA_asmbl_23980: 570249-570561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_370 0.0 - - -
2 Hb_001907_070 0.1058851564 - - 50S ribosomal protein L1p, putative [Ricinus communis]
3 Hb_002053_110 0.1263346771 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000363_060 0.1318135072 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_001220_050 0.1358445229 - - DNA-damage-inducible protein f, putative [Ricinus communis]
6 Hb_006911_070 0.139854634 - - 50S ribosomal protein L1p, putative [Ricinus communis]
7 Hb_005618_150 0.1413626844 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
8 Hb_000690_060 0.1425564991 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
9 Hb_001723_030 0.1435537233 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
10 Hb_001408_030 0.143573795 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
11 Hb_008092_050 0.1493855164 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
12 Hb_000260_710 0.1509896533 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
13 Hb_003025_140 0.1513911926 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011861_050 0.1521403965 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
15 Hb_010488_010 0.153772732 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
16 Hb_002740_190 0.154211924 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
17 Hb_005016_140 0.1547352545 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_003929_220 0.1552373112 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_028707_110 0.1562147335 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
20 Hb_010344_020 0.1569178768 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000023_370 Hb_000023_370 Hb_001907_070 Hb_001907_070 Hb_000023_370--Hb_001907_070 Hb_002053_110 Hb_002053_110 Hb_000023_370--Hb_002053_110 Hb_000363_060 Hb_000363_060 Hb_000023_370--Hb_000363_060 Hb_001220_050 Hb_001220_050 Hb_000023_370--Hb_001220_050 Hb_006911_070 Hb_006911_070 Hb_000023_370--Hb_006911_070 Hb_005618_150 Hb_005618_150 Hb_000023_370--Hb_005618_150 Hb_001907_070--Hb_005618_150 Hb_001907_070--Hb_006911_070 Hb_005038_030 Hb_005038_030 Hb_001907_070--Hb_005038_030 Hb_004871_010 Hb_004871_010 Hb_001907_070--Hb_004871_010 Hb_001723_030 Hb_001723_030 Hb_001907_070--Hb_001723_030 Hb_002053_110--Hb_000363_060 Hb_000816_100 Hb_000816_100 Hb_002053_110--Hb_000816_100 Hb_002053_110--Hb_001220_050 Hb_007769_040 Hb_007769_040 Hb_002053_110--Hb_007769_040 Hb_000033_110 Hb_000033_110 Hb_002053_110--Hb_000033_110 Hb_001660_120 Hb_001660_120 Hb_002053_110--Hb_001660_120 Hb_000363_060--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_000363_060--Hb_025477_050 Hb_031042_060 Hb_031042_060 Hb_000363_060--Hb_031042_060 Hb_001472_160 Hb_001472_160 Hb_000363_060--Hb_001472_160 Hb_000331_130 Hb_000331_130 Hb_000363_060--Hb_000331_130 Hb_000144_060 Hb_000144_060 Hb_000363_060--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_001220_050--Hb_000345_370 Hb_001220_050--Hb_007769_040 Hb_009020_040 Hb_009020_040 Hb_001220_050--Hb_009020_040 Hb_011861_050 Hb_011861_050 Hb_001220_050--Hb_011861_050 Hb_001220_050--Hb_001723_030 Hb_006198_130 Hb_006198_130 Hb_001220_050--Hb_006198_130 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_001959_240 Hb_001959_240 Hb_006911_070--Hb_001959_240 Hb_006911_070--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_006911_070--Hb_000302_190 Hb_006911_070--Hb_005618_150 Hb_008092_050 Hb_008092_050 Hb_005618_150--Hb_008092_050 Hb_164926_010 Hb_164926_010 Hb_005618_150--Hb_164926_010 Hb_005618_150--Hb_001723_030 Hb_006062_030 Hb_006062_030 Hb_005618_150--Hb_006062_030 Hb_005618_150--Hb_004871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95493 1.83283 8.16639 2.86823 4.15429 4.12637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.792971 0.962638 3.38017 1.56034 14.5784

CAGE analysis