Hb_000024_010

Information

Type -
Description -
Location Contig24: 711-5829
Sequence    

Annotation

kegg
ID tcc:TCM_003365
description DNA/RNA polymerases superfamily protein
nr
ID XP_007010454.1
description Uncharacterized protein TCM_044274 [Theobroma cacao]
swissprot
ID Q9UR07
description Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1
trembl
ID A0A061FWU4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_044274 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000024_010 0.0 - - Uncharacterized protein TCM_044274 [Theobroma cacao]
2 Hb_004712_150 0.1401344849 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002241_030 0.1505691792 - - Retrotransposon protein, putative [Theobroma cacao]
4 Hb_029243_020 0.1572507504 - - ENTH/VHS/GAT family protein [Theobroma cacao]
5 Hb_000656_060 0.169525541 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000661_260 0.1795679989 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
7 Hb_000920_130 0.1843977984 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000856_070 0.187359333 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
9 Hb_014231_010 0.1876694527 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
10 Hb_000001_130 0.1889098701 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_001541_070 0.1914885942 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
12 Hb_011021_050 0.1924479224 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
13 Hb_003910_060 0.1931043589 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
14 Hb_002918_180 0.1937192253 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
15 Hb_000009_410 0.1949964861 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
16 Hb_000471_140 0.1956861533 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g28640 [Prunus mume]
17 Hb_000417_200 0.1978670362 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
18 Hb_004204_010 0.1981580569 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
19 Hb_002007_160 0.1983864292 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
20 Hb_001488_180 0.1987096759 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000024_010 Hb_000024_010 Hb_004712_150 Hb_004712_150 Hb_000024_010--Hb_004712_150 Hb_002241_030 Hb_002241_030 Hb_000024_010--Hb_002241_030 Hb_029243_020 Hb_029243_020 Hb_000024_010--Hb_029243_020 Hb_000656_060 Hb_000656_060 Hb_000024_010--Hb_000656_060 Hb_000661_260 Hb_000661_260 Hb_000024_010--Hb_000661_260 Hb_000920_130 Hb_000920_130 Hb_000024_010--Hb_000920_130 Hb_005018_020 Hb_005018_020 Hb_004712_150--Hb_005018_020 Hb_001252_230 Hb_001252_230 Hb_004712_150--Hb_001252_230 Hb_003728_040 Hb_003728_040 Hb_004712_150--Hb_003728_040 Hb_000806_030 Hb_000806_030 Hb_004712_150--Hb_000806_030 Hb_000645_130 Hb_000645_130 Hb_004712_150--Hb_000645_130 Hb_000417_200 Hb_000417_200 Hb_002241_030--Hb_000417_200 Hb_000170_130 Hb_000170_130 Hb_002241_030--Hb_000170_130 Hb_002241_030--Hb_000656_060 Hb_002686_090 Hb_002686_090 Hb_002241_030--Hb_002686_090 Hb_012506_040 Hb_012506_040 Hb_002241_030--Hb_012506_040 Hb_003014_030 Hb_003014_030 Hb_029243_020--Hb_003014_030 Hb_004705_020 Hb_004705_020 Hb_029243_020--Hb_004705_020 Hb_000009_410 Hb_000009_410 Hb_029243_020--Hb_000009_410 Hb_004204_010 Hb_004204_010 Hb_029243_020--Hb_004204_010 Hb_029243_020--Hb_000656_060 Hb_003047_020 Hb_003047_020 Hb_029243_020--Hb_003047_020 Hb_005186_040 Hb_005186_040 Hb_000656_060--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_000656_060--Hb_011021_050 Hb_001726_050 Hb_001726_050 Hb_000656_060--Hb_001726_050 Hb_000261_150 Hb_000261_150 Hb_000656_060--Hb_000261_150 Hb_001726_100 Hb_001726_100 Hb_000656_060--Hb_001726_100 Hb_000856_070 Hb_000856_070 Hb_000656_060--Hb_000856_070 Hb_002524_030 Hb_002524_030 Hb_000661_260--Hb_002524_030 Hb_000661_260--Hb_003014_030 Hb_000083_270 Hb_000083_270 Hb_000661_260--Hb_000083_270 Hb_000661_260--Hb_029243_020 Hb_000631_110 Hb_000631_110 Hb_000661_260--Hb_000631_110 Hb_000574_530 Hb_000574_530 Hb_000661_260--Hb_000574_530 Hb_001269_370 Hb_001269_370 Hb_000920_130--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_000920_130--Hb_002259_170 Hb_000086_630 Hb_000086_630 Hb_000920_130--Hb_000086_630 Hb_000506_110 Hb_000506_110 Hb_000920_130--Hb_000506_110 Hb_000270_120 Hb_000270_120 Hb_000920_130--Hb_000270_120 Hb_001571_060 Hb_001571_060 Hb_000920_130--Hb_001571_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.154837 0.37639 0.133022 0.0228108 0.0375315 0.0917856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0866006 0.0973577 0.242672 0.243075 0.354026

CAGE analysis