Hb_000024_020

Information

Type -
Description -
Location Contig24: 9969-10529
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12610g
description POPTRDRAFT_766120; hypothetical protein
nr
ID XP_012075683.1
description PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09271 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25111: 9795-10680
cDNA
(Sanger)
(ID:Location)		 031_C08.ab1: 9834-10610

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000024_020 0.0 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
2 Hb_113396_010 0.0835391397 - - cytochrome P450, putative [Ricinus communis]
3 Hb_007441_150 0.08538819 - - Ankyrin repeat family protein [Theobroma cacao]
4 Hb_002218_080 0.086032738 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_001310_080 0.0919747937 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
6 Hb_000567_110 0.1014994519 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
7 Hb_004112_050 0.1022021406 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_002110_050 0.1171116578 - - conserved hypothetical protein [Ricinus communis]
9 Hb_026048_030 0.1184088818 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005694_150 0.1197040887 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
11 Hb_005282_010 0.123100886 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
12 Hb_160576_010 0.126373768 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
13 Hb_006573_280 0.1271969266 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
14 Hb_096930_010 0.1290267732 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
15 Hb_008948_110 0.129340804 - - PREDICTED: peroxidase 25 [Jatropha curcas]
16 Hb_001104_270 0.1295726655 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
17 Hb_006002_020 0.1299921497 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
18 Hb_004241_100 0.1300478768 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
19 Hb_010417_110 0.1308542737 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000127_200 0.130979051 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]

Gene co-expression network

sample Hb_000024_020 Hb_000024_020 Hb_113396_010 Hb_113396_010 Hb_000024_020--Hb_113396_010 Hb_007441_150 Hb_007441_150 Hb_000024_020--Hb_007441_150 Hb_002218_080 Hb_002218_080 Hb_000024_020--Hb_002218_080 Hb_001310_080 Hb_001310_080 Hb_000024_020--Hb_001310_080 Hb_000567_110 Hb_000567_110 Hb_000024_020--Hb_000567_110 Hb_004112_050 Hb_004112_050 Hb_000024_020--Hb_004112_050 Hb_113396_010--Hb_001310_080 Hb_113396_010--Hb_002218_080 Hb_026048_030 Hb_026048_030 Hb_113396_010--Hb_026048_030 Hb_000365_190 Hb_000365_190 Hb_113396_010--Hb_000365_190 Hb_113396_010--Hb_004112_050 Hb_001894_060 Hb_001894_060 Hb_007441_150--Hb_001894_060 Hb_000988_020 Hb_000988_020 Hb_007441_150--Hb_000988_020 Hb_032260_100 Hb_032260_100 Hb_007441_150--Hb_032260_100 Hb_000805_150 Hb_000805_150 Hb_007441_150--Hb_000805_150 Hb_029622_080 Hb_029622_080 Hb_007441_150--Hb_029622_080 Hb_002110_050 Hb_002110_050 Hb_002218_080--Hb_002110_050 Hb_002218_080--Hb_001310_080 Hb_002548_020 Hb_002548_020 Hb_002218_080--Hb_002548_020 Hb_002218_080--Hb_004112_050 Hb_001310_080--Hb_026048_030 Hb_001310_080--Hb_004112_050 Hb_001518_030 Hb_001518_030 Hb_001310_080--Hb_001518_030 Hb_006573_280 Hb_006573_280 Hb_000567_110--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_000567_110--Hb_004724_300 Hb_003633_150 Hb_003633_150 Hb_000567_110--Hb_003633_150 Hb_000567_110--Hb_004112_050 Hb_005694_150 Hb_005694_150 Hb_000567_110--Hb_005694_150 Hb_004112_050--Hb_004724_300 Hb_007102_010 Hb_007102_010 Hb_004112_050--Hb_007102_010 Hb_007007_030 Hb_007007_030 Hb_004112_050--Hb_007007_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.253137 137.541 50.664 78.1172 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.894255 1.93245 0.760075 4.8841 25.5441

CAGE analysis