Hb_000024_070

Information

Type -
Description -
Location Contig24: 70025-73696
Sequence    

Annotation

kegg
ID vvi:100251506
description dnaJ homolog subfamily B member 6-A
nr
ID XP_012068829.1
description PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
swissprot
ID A5IIT4
description Chaperone protein DnaJ OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1
trembl
ID A0A067KWX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24656 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25120: 70083-73685 , PASA_asmbl_25121: 70436-73550
cDNA
(Sanger)
(ID:Location)		 002_A18.ab1: 70890-73685

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000024_070 0.0 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
2 Hb_003216_120 0.132765242 - - PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X2 [Jatropha curcas]
3 Hb_000363_380 0.1347111291 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
4 Hb_002708_020 0.1370409438 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
5 Hb_002612_010 0.1432529545 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
6 Hb_008246_030 0.1443181477 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
7 Hb_002686_330 0.1452515628 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
8 Hb_000170_060 0.153794332 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
9 Hb_002188_090 0.156476715 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
10 Hb_000483_180 0.1582233427 - - -
11 Hb_001907_060 0.1603747086 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
12 Hb_004899_030 0.160807498 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
13 Hb_002084_040 0.1661908864 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
14 Hb_002307_350 0.1719537755 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_001522_010 0.1729727554 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
16 Hb_030627_040 0.1752771047 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
17 Hb_004920_060 0.1754482875 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
18 Hb_002805_170 0.1756822612 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
19 Hb_000735_100 0.1780777761 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
20 Hb_007223_010 0.1786142389 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000024_070 Hb_000024_070 Hb_003216_120 Hb_003216_120 Hb_000024_070--Hb_003216_120 Hb_000363_380 Hb_000363_380 Hb_000024_070--Hb_000363_380 Hb_002708_020 Hb_002708_020 Hb_000024_070--Hb_002708_020 Hb_002612_010 Hb_002612_010 Hb_000024_070--Hb_002612_010 Hb_008246_030 Hb_008246_030 Hb_000024_070--Hb_008246_030 Hb_002686_330 Hb_002686_330 Hb_000024_070--Hb_002686_330 Hb_004899_030 Hb_004899_030 Hb_003216_120--Hb_004899_030 Hb_000809_210 Hb_000809_210 Hb_003216_120--Hb_000809_210 Hb_028707_090 Hb_028707_090 Hb_003216_120--Hb_028707_090 Hb_003216_120--Hb_000363_380 Hb_003216_120--Hb_008246_030 Hb_000363_380--Hb_008246_030 Hb_017895_020 Hb_017895_020 Hb_000363_380--Hb_017895_020 Hb_028872_120 Hb_028872_120 Hb_000363_380--Hb_028872_120 Hb_003029_130 Hb_003029_130 Hb_000363_380--Hb_003029_130 Hb_001178_150 Hb_001178_150 Hb_000363_380--Hb_001178_150 Hb_000487_220 Hb_000487_220 Hb_000363_380--Hb_000487_220 Hb_000160_150 Hb_000160_150 Hb_002708_020--Hb_000160_150 Hb_002708_020--Hb_002686_330 Hb_002708_020--Hb_008246_030 Hb_027402_090 Hb_027402_090 Hb_002708_020--Hb_027402_090 Hb_002307_350 Hb_002307_350 Hb_002708_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002708_020--Hb_005408_020 Hb_006829_090 Hb_006829_090 Hb_002612_010--Hb_006829_090 Hb_004920_060 Hb_004920_060 Hb_002612_010--Hb_004920_060 Hb_033594_020 Hb_033594_020 Hb_002612_010--Hb_033594_020 Hb_000685_080 Hb_000685_080 Hb_002612_010--Hb_000685_080 Hb_002612_010--Hb_008246_030 Hb_001473_080 Hb_001473_080 Hb_002612_010--Hb_001473_080 Hb_008246_030--Hb_004920_060 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_008246_030--Hb_017895_020 Hb_002686_330--Hb_027402_090 Hb_002686_330--Hb_008246_030 Hb_000170_060 Hb_000170_060 Hb_002686_330--Hb_000170_060 Hb_149838_010 Hb_149838_010 Hb_002686_330--Hb_149838_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.381 81.7197 70.005 11.7855 170.206 148.182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.9681 3.81642 9.94621 16.2 56.6843

CAGE analysis