Hb_000024_080

Information

Type -
Description -
Location Contig24: 75171-82006
Sequence    

Annotation

kegg
ID cic:CICLE_v10026416mg
description hypothetical protein
nr
ID XP_012068828.1
description PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
swissprot
ID Q9LQI7
description Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2
trembl
ID A0A067KWS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24655 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25122: 75195-82049 , PASA_asmbl_25123: 77399-81999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000024_080 0.0 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
2 Hb_000087_020 0.04323019 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
3 Hb_004032_100 0.0543643694 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
4 Hb_010180_020 0.0654267796 - - hypothetical protein glysoja_030394 [Glycine soja]
5 Hb_000676_290 0.0668736266 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
6 Hb_004128_190 0.0685504784 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
7 Hb_005398_030 0.0685725047 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
8 Hb_000085_320 0.0750879103 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
9 Hb_000444_050 0.0751123217 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
10 Hb_002078_150 0.0757940465 - - protein with unknown function [Ricinus communis]
11 Hb_000230_540 0.0767659079 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
12 Hb_000787_140 0.0773916336 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
13 Hb_004306_020 0.0793468057 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
14 Hb_001604_080 0.0801103013 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
15 Hb_000172_030 0.0821277971 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
16 Hb_000751_130 0.0826429517 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
17 Hb_180301_010 0.0840191207 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
18 Hb_010504_020 0.0853343852 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_018133_060 0.0865964454 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
20 Hb_000926_250 0.0875047785 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]

Gene co-expression network

sample Hb_000024_080 Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_000024_080--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000024_080--Hb_004032_100 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_005398_030 Hb_005398_030 Hb_000024_080--Hb_005398_030 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_000087_020--Hb_005398_030 Hb_000087_020--Hb_004032_100 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_000751_130 Hb_000751_130 Hb_000087_020--Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_001604_080 Hb_001604_080 Hb_010180_020--Hb_001604_080 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_000676_290--Hb_000087_020 Hb_000676_290--Hb_005398_030 Hb_000676_290--Hb_010180_020 Hb_071130_030 Hb_071130_030 Hb_000676_290--Hb_071130_030 Hb_002112_040 Hb_002112_040 Hb_000676_290--Hb_002112_040 Hb_002078_150 Hb_002078_150 Hb_004128_190--Hb_002078_150 Hb_003847_080 Hb_003847_080 Hb_004128_190--Hb_003847_080 Hb_000245_130 Hb_000245_130 Hb_004128_190--Hb_000245_130 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_012305_050 Hb_012305_050 Hb_004128_190--Hb_012305_050 Hb_117134_010 Hb_117134_010 Hb_005398_030--Hb_117134_010 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_001235_070 Hb_001235_070 Hb_005398_030--Hb_001235_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.52422 2.92702 2.99353 6.50079 6.66506 15.34
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2872 15.1316 10.8941 4.52787 2.81855

CAGE analysis