Hb_000024_120

Information

Type -
Description -
Location Contig24: 133663-139972
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07550g
description POPTRDRAFT_417915; hypothetical protein
nr
ID XP_011020006.1
description PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HAZ6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07550g PE=4 SV=2
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105122546 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25124: 133681-139876 , PASA_asmbl_25125: 136189-136409
cDNA
(Sanger)
(ID:Location)		 029_I01.ab1: 137156-139675

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000024_120 0.0 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
2 Hb_000345_490 0.0585954175 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
3 Hb_005610_080 0.0736610958 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009449_090 0.0758676585 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
5 Hb_005054_190 0.0789204359 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
6 Hb_003430_030 0.0834313889 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
7 Hb_000116_510 0.08660491 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
8 Hb_007576_220 0.0871752406 - - PREDICTED: kanadaptin [Jatropha curcas]
9 Hb_001454_220 0.0890709142 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
10 Hb_002902_020 0.0951449736 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
11 Hb_002073_280 0.0961245634 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
12 Hb_000086_050 0.0975941512 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
13 Hb_000185_150 0.0980413617 - - Heme-binding protein, putative [Ricinus communis]
14 Hb_003638_010 0.0984285846 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
15 Hb_001231_030 0.1026314513 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
16 Hb_002739_130 0.1064685882 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
17 Hb_167381_020 0.1077395174 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
18 Hb_000625_120 0.1082625586 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
19 Hb_002997_160 0.1088564451 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
20 Hb_000227_310 0.1091002164 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000024_120 Hb_000024_120 Hb_000345_490 Hb_000345_490 Hb_000024_120--Hb_000345_490 Hb_005610_080 Hb_005610_080 Hb_000024_120--Hb_005610_080 Hb_009449_090 Hb_009449_090 Hb_000024_120--Hb_009449_090 Hb_005054_190 Hb_005054_190 Hb_000024_120--Hb_005054_190 Hb_003430_030 Hb_003430_030 Hb_000024_120--Hb_003430_030 Hb_000116_510 Hb_000116_510 Hb_000024_120--Hb_000116_510 Hb_000345_490--Hb_005610_080 Hb_002902_020 Hb_002902_020 Hb_000345_490--Hb_002902_020 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_000345_490--Hb_005054_190 Hb_006132_040 Hb_006132_040 Hb_005610_080--Hb_006132_040 Hb_005610_080--Hb_003430_030 Hb_005610_080--Hb_005054_190 Hb_000890_010 Hb_000890_010 Hb_005610_080--Hb_000890_010 Hb_007576_220 Hb_007576_220 Hb_009449_090--Hb_007576_220 Hb_005539_040 Hb_005539_040 Hb_009449_090--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_009449_090--Hb_000086_050 Hb_002571_030 Hb_002571_030 Hb_009449_090--Hb_002571_030 Hb_007283_030 Hb_007283_030 Hb_009449_090--Hb_007283_030 Hb_005054_190--Hb_003430_030 Hb_000363_280 Hb_000363_280 Hb_005054_190--Hb_000363_280 Hb_011918_050 Hb_011918_050 Hb_005054_190--Hb_011918_050 Hb_003430_030--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_003430_030--Hb_000120_420 Hb_003430_030--Hb_000345_490 Hb_167381_020 Hb_167381_020 Hb_000116_510--Hb_167381_020 Hb_008406_040 Hb_008406_040 Hb_000116_510--Hb_008406_040 Hb_000116_510--Hb_000345_490 Hb_000116_510--Hb_009449_090 Hb_000116_510--Hb_001454_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.54 93.8442 72.3688 22.0805 67.6549 47.6963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.465 13.3937 11.2779 27.3514 34.3786

CAGE analysis