Hb_000024_130

Information

Type -
Description -
Location Contig24: 149609-156503
Sequence    

Annotation

kegg
ID rcu:RCOM_0594830
description hypothetical protein
nr
ID XP_002527807.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54VM3
description TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1
trembl
ID B9SP88
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0594830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25126: 149441-156469 , PASA_asmbl_25127: 149836-156275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000024_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000731_210 0.0960557123 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000760_080 0.1054508184 - - mutt domain protein, putative [Ricinus communis]
4 Hb_007575_030 0.1111604712 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
5 Hb_003106_230 0.1178115859 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
6 Hb_042202_020 0.1201120195 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
7 Hb_003142_060 0.1223014217 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000009_150 0.1225756322 - - carbohydrate transporter, putative [Ricinus communis]
9 Hb_003879_020 0.1233942468 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
10 Hb_000847_020 0.1247254797 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
11 Hb_001722_070 0.1251577779 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
12 Hb_005568_050 0.1254430015 - - ascorbate peroxidase [Hevea brasiliensis]
13 Hb_000003_020 0.126629478 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
14 Hb_001048_100 0.127572603 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
15 Hb_004421_010 0.1278000296 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_026698_020 0.1311377044 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_000438_010 0.131214577 - - -
18 Hb_001277_400 0.1332859098 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
19 Hb_001776_100 0.1338900263 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
20 Hb_000318_170 0.1342671884 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000024_130 Hb_000024_130 Hb_000731_210 Hb_000731_210 Hb_000024_130--Hb_000731_210 Hb_000760_080 Hb_000760_080 Hb_000024_130--Hb_000760_080 Hb_007575_030 Hb_007575_030 Hb_000024_130--Hb_007575_030 Hb_003106_230 Hb_003106_230 Hb_000024_130--Hb_003106_230 Hb_042202_020 Hb_042202_020 Hb_000024_130--Hb_042202_020 Hb_003142_060 Hb_003142_060 Hb_000024_130--Hb_003142_060 Hb_002301_370 Hb_002301_370 Hb_000731_210--Hb_002301_370 Hb_001048_100 Hb_001048_100 Hb_000731_210--Hb_001048_100 Hb_031385_010 Hb_031385_010 Hb_000731_210--Hb_031385_010 Hb_000318_170 Hb_000318_170 Hb_000731_210--Hb_000318_170 Hb_000731_210--Hb_003106_230 Hb_000760_080--Hb_001048_100 Hb_005568_050 Hb_005568_050 Hb_000760_080--Hb_005568_050 Hb_002503_050 Hb_002503_050 Hb_000760_080--Hb_002503_050 Hb_033312_050 Hb_033312_050 Hb_000760_080--Hb_033312_050 Hb_000760_080--Hb_000731_210 Hb_004883_020 Hb_004883_020 Hb_007575_030--Hb_004883_020 Hb_000261_310 Hb_000261_310 Hb_007575_030--Hb_000261_310 Hb_000165_070 Hb_000165_070 Hb_007575_030--Hb_000165_070 Hb_000116_240 Hb_000116_240 Hb_007575_030--Hb_000116_240 Hb_007575_030--Hb_000318_170 Hb_000042_380 Hb_000042_380 Hb_007575_030--Hb_000042_380 Hb_003106_230--Hb_003142_060 Hb_003106_230--Hb_000318_170 Hb_001008_110 Hb_001008_110 Hb_003106_230--Hb_001008_110 Hb_000085_380 Hb_000085_380 Hb_003106_230--Hb_000085_380 Hb_033234_010 Hb_033234_010 Hb_042202_020--Hb_033234_010 Hb_001268_300 Hb_001268_300 Hb_042202_020--Hb_001268_300 Hb_042202_020--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_042202_020--Hb_002833_020 Hb_000527_140 Hb_000527_140 Hb_042202_020--Hb_000527_140 Hb_042202_020--Hb_003142_060 Hb_000003_020 Hb_000003_020 Hb_003142_060--Hb_000003_020 Hb_000834_040 Hb_000834_040 Hb_003142_060--Hb_000834_040 Hb_003142_060--Hb_001008_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.516258 14.2802 16.6225 14.6529 0.270173 0.856304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07942 1.58059 1.09112 16.209 11.6887

CAGE analysis