Hb_000025_030

Information

Type -
Description -
Location Contig25: 52462-62659
Sequence    

Annotation

kegg
ID rcu:RCOM_0785850
description transcription factor, putative
nr
ID XP_002523243.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O48791
description Stomatal closure-related actin-binding protein 1 OS=Arabidopsis thaliana GN=SCAB1 PE=1 SV=1
trembl
ID B9SB74
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0785850 PE=4 SV=1
Gene Ontology
ID GO:0003779
description stomatal closure-related actin-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26038: 52488-62655 , PASA_asmbl_26039: 52488-62264 , PASA_asmbl_26040: 55560-55757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_030 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_000019_150 0.0692548673 - - PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]
3 Hb_000808_050 0.0982799294 - - exonuclease, putative [Ricinus communis]
4 Hb_000094_280 0.099867713 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
5 Hb_001143_190 0.1013988572 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
6 Hb_001450_050 0.103610281 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007416_330 0.1036997399 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
8 Hb_002197_020 0.1043626614 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
9 Hb_000300_500 0.1093401204 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
10 Hb_010931_070 0.1094332832 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
11 Hb_011519_010 0.1104509848 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
12 Hb_005000_190 0.1113659974 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
13 Hb_032202_140 0.1120605898 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
14 Hb_000465_160 0.1143177268 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
15 Hb_004007_220 0.1148239459 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
16 Hb_006017_010 0.1151722819 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
17 Hb_000046_040 0.115793917 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003528_010 0.115946204 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
19 Hb_007982_080 0.1162339204 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
20 Hb_001140_270 0.1176388072 - - hypothetical protein EUGRSUZ_E00166 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000025_030 Hb_000025_030 Hb_000019_150 Hb_000019_150 Hb_000025_030--Hb_000019_150 Hb_000808_050 Hb_000808_050 Hb_000025_030--Hb_000808_050 Hb_000094_280 Hb_000094_280 Hb_000025_030--Hb_000094_280 Hb_001143_190 Hb_001143_190 Hb_000025_030--Hb_001143_190 Hb_001450_050 Hb_001450_050 Hb_000025_030--Hb_001450_050 Hb_007416_330 Hb_007416_330 Hb_000025_030--Hb_007416_330 Hb_001472_060 Hb_001472_060 Hb_000019_150--Hb_001472_060 Hb_000019_150--Hb_001143_190 Hb_000019_150--Hb_000808_050 Hb_004007_220 Hb_004007_220 Hb_000019_150--Hb_004007_220 Hb_010931_070 Hb_010931_070 Hb_000019_150--Hb_010931_070 Hb_000141_250 Hb_000141_250 Hb_000808_050--Hb_000141_250 Hb_002542_020 Hb_002542_020 Hb_000808_050--Hb_002542_020 Hb_008511_130 Hb_008511_130 Hb_000808_050--Hb_008511_130 Hb_000599_180 Hb_000599_180 Hb_000808_050--Hb_000599_180 Hb_006817_010 Hb_006817_010 Hb_000808_050--Hb_006817_010 Hb_000808_050--Hb_001472_060 Hb_001579_030 Hb_001579_030 Hb_000094_280--Hb_001579_030 Hb_001799_030 Hb_001799_030 Hb_000094_280--Hb_001799_030 Hb_003528_010 Hb_003528_010 Hb_000094_280--Hb_003528_010 Hb_000300_500 Hb_000300_500 Hb_000094_280--Hb_000300_500 Hb_032808_010 Hb_032808_010 Hb_000094_280--Hb_032808_010 Hb_002809_050 Hb_002809_050 Hb_001143_190--Hb_002809_050 Hb_002909_140 Hb_002909_140 Hb_001143_190--Hb_002909_140 Hb_001004_070 Hb_001004_070 Hb_001143_190--Hb_001004_070 Hb_001143_190--Hb_007416_330 Hb_004369_020 Hb_004369_020 Hb_001450_050--Hb_004369_020 Hb_003728_080 Hb_003728_080 Hb_001450_050--Hb_003728_080 Hb_010139_040 Hb_010139_040 Hb_001450_050--Hb_010139_040 Hb_002835_040 Hb_002835_040 Hb_001450_050--Hb_002835_040 Hb_000330_100 Hb_000330_100 Hb_001450_050--Hb_000330_100 Hb_148209_100 Hb_148209_100 Hb_001450_050--Hb_148209_100 Hb_007894_110 Hb_007894_110 Hb_007416_330--Hb_007894_110 Hb_006017_010 Hb_006017_010 Hb_007416_330--Hb_006017_010 Hb_001221_080 Hb_001221_080 Hb_007416_330--Hb_001221_080 Hb_109980_010 Hb_109980_010 Hb_007416_330--Hb_109980_010 Hb_001408_140 Hb_001408_140 Hb_007416_330--Hb_001408_140 Hb_114310_090 Hb_114310_090 Hb_007416_330--Hb_114310_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7138 13.1644 36.5506 23.24 24.9432 22.7268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5051 20.3498 41.2211 21.8185 13.4359

CAGE analysis