Hb_000025_050

Information

Type -
Description -
Location Contig25: 71841-77837
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13040g
description POPTRDRAFT_757540; hypothetical protein
nr
ID XP_002304511.1
description hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
swissprot
ID O81742
description Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2
trembl
ID B9GWT9
description Beta-adaptin-like protein OS=Populus trichocarpa GN=POPTR_0003s13040g PE=3 SV=1
Gene Ontology
ID GO:0030131
description beta-adaptin-like protein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26041: 71884-72752 , PASA_asmbl_26042: 75183-75730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_050 0.0 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
2 Hb_076874_010 0.0800086485 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
3 Hb_106411_010 0.0948082642 - - Ribosomal protein S25 family protein [Theobroma cacao]
4 Hb_001310_110 0.1016668405 - - unnamed protein product [Coffea canephora]
5 Hb_011671_090 0.1091233305 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
6 Hb_000785_030 0.109494233 - - hypothetical protein RCOM_0808030 [Ricinus communis]
7 Hb_003925_070 0.1107530756 - - ATOZI1, putative [Ricinus communis]
8 Hb_002530_010 0.1118119447 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
9 Hb_023001_050 0.1121307594 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
10 Hb_126295_010 0.1181843768 - - PREDICTED: protein SEH1 [Jatropha curcas]
11 Hb_001752_040 0.1205434051 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
12 Hb_000123_090 0.1206309242 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
13 Hb_105386_010 0.1226024522 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
14 Hb_000106_130 0.1227291648 - - unnamed protein product [Vitis vinifera]
15 Hb_001910_020 0.1257340741 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
16 Hb_005085_020 0.1265691615 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
17 Hb_000392_050 0.1273807083 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
18 Hb_030131_040 0.1275946319 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
19 Hb_001195_260 0.1276148469 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
20 Hb_001142_050 0.1283646432 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_050 Hb_000025_050 Hb_076874_010 Hb_076874_010 Hb_000025_050--Hb_076874_010 Hb_106411_010 Hb_106411_010 Hb_000025_050--Hb_106411_010 Hb_001310_110 Hb_001310_110 Hb_000025_050--Hb_001310_110 Hb_011671_090 Hb_011671_090 Hb_000025_050--Hb_011671_090 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030 Hb_003925_070 Hb_003925_070 Hb_000025_050--Hb_003925_070 Hb_076874_010--Hb_003925_070 Hb_076874_010--Hb_106411_010 Hb_000608_110 Hb_000608_110 Hb_076874_010--Hb_000608_110 Hb_002530_010 Hb_002530_010 Hb_076874_010--Hb_002530_010 Hb_086022_010 Hb_086022_010 Hb_076874_010--Hb_086022_010 Hb_106411_010--Hb_003925_070 Hb_001752_040 Hb_001752_040 Hb_106411_010--Hb_001752_040 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_002508_010 Hb_002508_010 Hb_106411_010--Hb_002508_010 Hb_000933_020 Hb_000933_020 Hb_001310_110--Hb_000933_020 Hb_009775_020 Hb_009775_020 Hb_001310_110--Hb_009775_020 Hb_000123_090 Hb_000123_090 Hb_001310_110--Hb_000123_090 Hb_000592_080 Hb_000592_080 Hb_001310_110--Hb_000592_080 Hb_000959_270 Hb_000959_270 Hb_001310_110--Hb_000959_270 Hb_030131_040 Hb_030131_040 Hb_011671_090--Hb_030131_040 Hb_000526_050 Hb_000526_050 Hb_011671_090--Hb_000526_050 Hb_001341_120 Hb_001341_120 Hb_011671_090--Hb_001341_120 Hb_000009_650 Hb_000009_650 Hb_011671_090--Hb_000009_650 Hb_156825_010 Hb_156825_010 Hb_011671_090--Hb_156825_010 Hb_000392_050 Hb_000392_050 Hb_000785_030--Hb_000392_050 Hb_009222_010 Hb_009222_010 Hb_000785_030--Hb_009222_010 Hb_000785_030--Hb_000959_270 Hb_002942_050 Hb_002942_050 Hb_000785_030--Hb_002942_050 Hb_001910_020 Hb_001910_020 Hb_000785_030--Hb_001910_020 Hb_000059_140 Hb_000059_140 Hb_000785_030--Hb_000059_140 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_003925_070--Hb_086022_010 Hb_070469_010 Hb_070469_010 Hb_003925_070--Hb_070469_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02085 1.06813 1.92707 2.38679 2.812 3.53122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38521 1.72006 0.840504 0.582481 0.504427

CAGE analysis