Hb_000025_060

Information

Type -
Description -
Location Contig25: 77859-78242
Sequence    

Annotation

kegg
ID -
description -
nr
ID ABK95710.1
description unknown [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PH57
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0030131
description beta-adaptin-like protein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_060 0.0 - - unknown [Populus trichocarpa]
2 Hb_007508_040 0.1583878108 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
3 Hb_156526_010 0.2057912095 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
4 Hb_126112_010 0.2242665287 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
5 Hb_002045_140 0.2392954808 - - histone acetyltransferase, partial [Triticum aestivum]
6 Hb_021888_110 0.2412016146 - - -
7 Hb_000523_100 0.2456490809 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
8 Hb_007765_010 0.2457760125 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007136_020 0.2570194548 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
10 Hb_087762_010 0.2571623675 - - thioredoxin-like family protein [Hevea brasiliensis]
11 Hb_000025_100 0.2605395494 - - -
12 Hb_144101_010 0.2657342529 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
13 Hb_003297_020 0.2663866824 - - unknown [Populus trichocarpa x Populus deltoides]
14 Hb_071923_010 0.2748052493 - - -
15 Hb_003061_010 0.2797861365 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
16 Hb_002249_110 0.2838926531 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
17 Hb_000429_250 0.2843419059 - - hypothetical protein L484_000744 [Morus notabilis]
18 Hb_070385_010 0.285565501 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
19 Hb_098546_010 0.2889632543 - - thioredoxin-like family protein [Hevea brasiliensis]
20 Hb_000193_150 0.290438126 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_060 Hb_000025_060 Hb_007508_040 Hb_007508_040 Hb_000025_060--Hb_007508_040 Hb_156526_010 Hb_156526_010 Hb_000025_060--Hb_156526_010 Hb_126112_010 Hb_126112_010 Hb_000025_060--Hb_126112_010 Hb_002045_140 Hb_002045_140 Hb_000025_060--Hb_002045_140 Hb_021888_110 Hb_021888_110 Hb_000025_060--Hb_021888_110 Hb_000523_100 Hb_000523_100 Hb_000025_060--Hb_000523_100 Hb_007765_010 Hb_007765_010 Hb_007508_040--Hb_007765_010 Hb_007136_020 Hb_007136_020 Hb_007508_040--Hb_007136_020 Hb_000193_150 Hb_000193_150 Hb_007508_040--Hb_000193_150 Hb_170487_010 Hb_170487_010 Hb_007508_040--Hb_170487_010 Hb_007508_040--Hb_156526_010 Hb_156526_010--Hb_002045_140 Hb_003061_010 Hb_003061_010 Hb_156526_010--Hb_003061_010 Hb_156526_010--Hb_126112_010 Hb_003073_050 Hb_003073_050 Hb_156526_010--Hb_003073_050 Hb_005511_100 Hb_005511_100 Hb_156526_010--Hb_005511_100 Hb_003297_010 Hb_003297_010 Hb_156526_010--Hb_003297_010 Hb_126112_010--Hb_000523_100 Hb_126112_010--Hb_003061_010 Hb_000025_100 Hb_000025_100 Hb_126112_010--Hb_000025_100 Hb_126112_010--Hb_021888_110 Hb_003581_010 Hb_003581_010 Hb_126112_010--Hb_003581_010 Hb_008667_040 Hb_008667_040 Hb_002045_140--Hb_008667_040 Hb_002045_140--Hb_003073_050 Hb_098546_010 Hb_098546_010 Hb_002045_140--Hb_098546_010 Hb_082407_010 Hb_082407_010 Hb_002045_140--Hb_082407_010 Hb_136765_010 Hb_136765_010 Hb_002045_140--Hb_136765_010 Hb_115919_010 Hb_115919_010 Hb_021888_110--Hb_115919_010 Hb_021888_110--Hb_000025_100 Hb_001095_060 Hb_001095_060 Hb_021888_110--Hb_001095_060 Hb_144101_010 Hb_144101_010 Hb_021888_110--Hb_144101_010 Hb_121236_010 Hb_121236_010 Hb_021888_110--Hb_121236_010 Hb_088065_010 Hb_088065_010 Hb_000523_100--Hb_088065_010 Hb_088774_010 Hb_088774_010 Hb_000523_100--Hb_088774_010 Hb_000295_090 Hb_000295_090 Hb_000523_100--Hb_000295_090 Hb_000003_180 Hb_000003_180 Hb_000523_100--Hb_000003_180 Hb_071923_010 Hb_071923_010 Hb_000523_100--Hb_071923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0918 2.97019 7.56948 4.20654 1.19156 32.9192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.11075 7.19645 0 0 0

CAGE analysis