Hb_000025_130

Information

Type -
Description -
Location Contig25: 115109-117549
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_130 0.0 - - -
2 Hb_010815_050 0.2578609912 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
3 Hb_000573_030 0.2690970379 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
4 Hb_000252_140 0.2718002942 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_007044_150 0.2911097549 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Jatropha curcas]
6 Hb_001377_390 0.3121592542 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
7 Hb_069868_010 0.3198603381 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
8 Hb_005595_020 0.327306299 - - -
9 Hb_014556_020 0.329310937 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_062135_010 0.3309069202 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
11 Hb_000359_240 0.3353247043 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
12 Hb_102699_010 0.3506749448 desease resistance Gene Name: NB-ARC NBS-LRR type disease resistance protein [Populus trichocarpa]
13 Hb_001221_010 0.356714544 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003554_020 0.3706990379 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
15 Hb_002046_030 0.3720388607 - - PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]
16 Hb_012094_030 0.3734514792 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
17 Hb_009722_020 0.3811598675 - - -
18 Hb_023813_010 0.3819737981 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]
19 Hb_000092_210 0.3853273973 - - -
20 Hb_008202_030 0.3854390508 - - hypothetical protein B456_002G115600 [Gossypium raimondii]

Gene co-expression network

sample Hb_000025_130 Hb_000025_130 Hb_010815_050 Hb_010815_050 Hb_000025_130--Hb_010815_050 Hb_000573_030 Hb_000573_030 Hb_000025_130--Hb_000573_030 Hb_000252_140 Hb_000252_140 Hb_000025_130--Hb_000252_140 Hb_007044_150 Hb_007044_150 Hb_000025_130--Hb_007044_150 Hb_001377_390 Hb_001377_390 Hb_000025_130--Hb_001377_390 Hb_069868_010 Hb_069868_010 Hb_000025_130--Hb_069868_010 Hb_001195_430 Hb_001195_430 Hb_010815_050--Hb_001195_430 Hb_011174_030 Hb_011174_030 Hb_010815_050--Hb_011174_030 Hb_002791_040 Hb_002791_040 Hb_010815_050--Hb_002791_040 Hb_001190_050 Hb_001190_050 Hb_010815_050--Hb_001190_050 Hb_003124_180 Hb_003124_180 Hb_010815_050--Hb_003124_180 Hb_000573_030--Hb_007044_150 Hb_009722_020 Hb_009722_020 Hb_000573_030--Hb_009722_020 Hb_023813_010 Hb_023813_010 Hb_000573_030--Hb_023813_010 Hb_000092_210 Hb_000092_210 Hb_000573_030--Hb_000092_210 Hb_008202_030 Hb_008202_030 Hb_000573_030--Hb_008202_030 Hb_007426_240 Hb_007426_240 Hb_000573_030--Hb_007426_240 Hb_000252_140--Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_000252_140--Hb_014556_020 Hb_062135_010 Hb_062135_010 Hb_000252_140--Hb_062135_010 Hb_000359_240 Hb_000359_240 Hb_000252_140--Hb_000359_240 Hb_000252_140--Hb_069868_010 Hb_003554_020 Hb_003554_020 Hb_000252_140--Hb_003554_020 Hb_000800_100 Hb_000800_100 Hb_007044_150--Hb_000800_100 Hb_007044_150--Hb_008202_030 Hb_003621_010 Hb_003621_010 Hb_007044_150--Hb_003621_010 Hb_007044_150--Hb_009722_020 Hb_007044_150--Hb_023813_010 Hb_001377_390--Hb_014556_020 Hb_001377_390--Hb_000359_240 Hb_001377_390--Hb_062135_010 Hb_001377_390--Hb_003554_020 Hb_010320_030 Hb_010320_030 Hb_001377_390--Hb_010320_030 Hb_069868_010--Hb_003621_010 Hb_069868_010--Hb_000800_100 Hb_069868_010--Hb_008202_030 Hb_157340_010 Hb_157340_010 Hb_069868_010--Hb_157340_010 Hb_002046_030 Hb_002046_030 Hb_069868_010--Hb_002046_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.043045 0 0 0.137768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0965631 0 0.0399531 0

CAGE analysis