Hb_000025_140

Information

Type -
Description -
Location Contig25: 117367-125802
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07210g
description POPTRDRAFT_804410; las1-like family protein
nr
ID XP_002314010.1
description las1-like family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HNI6
description Las1-like family protein OS=Populus trichocarpa GN=POPTR_0009s07210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26051: 115726-116390 , PASA_asmbl_26052: 117382-117541 , PASA_asmbl_26053: 118793-124427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_140 0.0 - - las1-like family protein [Populus trichocarpa]
2 Hb_001369_420 0.0653425259 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
3 Hb_002506_020 0.067181585 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
4 Hb_048937_040 0.0806191639 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
5 Hb_007904_200 0.081092466 - - protein binding protein, putative [Ricinus communis]
6 Hb_006185_050 0.083430481 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
7 Hb_000645_050 0.0844051118 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
8 Hb_001047_030 0.0847317854 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
9 Hb_000392_300 0.0848188946 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
10 Hb_002400_470 0.0853795043 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_003195_070 0.0859290911 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_054865_100 0.0874948865 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
13 Hb_000010_330 0.0889769707 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
14 Hb_000051_070 0.0889857265 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
15 Hb_008695_180 0.0891014672 - - eukaryotic translation initiation factor [Hevea brasiliensis]
16 Hb_012022_160 0.0904763346 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
17 Hb_075481_030 0.0912622577 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
18 Hb_002200_080 0.0913018024 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
19 Hb_000152_380 0.0914536047 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
20 Hb_003417_020 0.0914906328 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000025_140 Hb_000025_140 Hb_001369_420 Hb_001369_420 Hb_000025_140--Hb_001369_420 Hb_002506_020 Hb_002506_020 Hb_000025_140--Hb_002506_020 Hb_048937_040 Hb_048937_040 Hb_000025_140--Hb_048937_040 Hb_007904_200 Hb_007904_200 Hb_000025_140--Hb_007904_200 Hb_006185_050 Hb_006185_050 Hb_000025_140--Hb_006185_050 Hb_000645_050 Hb_000645_050 Hb_000025_140--Hb_000645_050 Hb_000676_110 Hb_000676_110 Hb_001369_420--Hb_000676_110 Hb_008695_180 Hb_008695_180 Hb_001369_420--Hb_008695_180 Hb_000051_070 Hb_000051_070 Hb_001369_420--Hb_000051_070 Hb_000358_150 Hb_000358_150 Hb_001369_420--Hb_000358_150 Hb_001493_030 Hb_001493_030 Hb_001369_420--Hb_001493_030 Hb_003195_070 Hb_003195_070 Hb_002506_020--Hb_003195_070 Hb_000451_010 Hb_000451_010 Hb_002506_020--Hb_000451_010 Hb_000395_170 Hb_000395_170 Hb_002506_020--Hb_000395_170 Hb_002506_020--Hb_048937_040 Hb_002506_020--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_048937_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_000010_330 Hb_000010_330 Hb_048937_040--Hb_000010_330 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_007904_200--Hb_000010_330 Hb_007904_200--Hb_010457_030 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_001305_010 Hb_001305_010 Hb_006185_050--Hb_001305_010 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_000089_220 Hb_000089_220 Hb_006185_050--Hb_000089_220 Hb_000327_120 Hb_000327_120 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_006185_050--Hb_003175_010 Hb_003406_010 Hb_003406_010 Hb_000645_050--Hb_003406_010 Hb_054865_100 Hb_054865_100 Hb_000645_050--Hb_054865_100 Hb_000645_050--Hb_000327_120 Hb_001369_180 Hb_001369_180 Hb_000645_050--Hb_001369_180 Hb_003030_070 Hb_003030_070 Hb_000645_050--Hb_003030_070 Hb_007218_080 Hb_007218_080 Hb_000645_050--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60785 0.744127 0.546547 1.0446 1.91721 1.52212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.886274 1.39362 1.25227 0.541915 0.578703

CAGE analysis