Hb_000025_160

Information

Type -
Description -
Location Contig25: 138907-142712
Sequence    

Annotation

kegg
ID rcu:RCOM_0218930
description hypothetical protein
nr
ID XP_012065843.1
description PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
swissprot
ID Q8RY82
description F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1
trembl
ID B9T4W6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0218930 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at2g32560-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26056: 138248-138363 , PASA_asmbl_26057: 138999-142712 , PASA_asmbl_26058: 141004-141132 , PASA_asmbl_26059: 141739-142130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_160 0.0 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
2 Hb_002233_160 0.1231580184 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
3 Hb_061222_010 0.126685845 - - hypothetical protein RCOM_0012650 [Ricinus communis]
4 Hb_012395_110 0.1327489231 - - PREDICTED: peroxygenase [Jatropha curcas]
5 Hb_000193_340 0.1360809491 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
6 Hb_004241_110 0.1385302619 - - Minor allergen Alt a, putative [Ricinus communis]
7 Hb_000023_110 0.1411710791 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
8 Hb_001085_190 0.1417957667 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
9 Hb_001493_140 0.14239377 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
10 Hb_161396_010 0.144451765 - - hypothetical protein F383_26394 [Gossypium arboreum]
11 Hb_000003_110 0.1464464665 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_084147_010 0.1476863589 - - amino acid transporter, putative [Ricinus communis]
13 Hb_042083_030 0.1483753167 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000529_010 0.1484119748 - - cyclin d, putative [Ricinus communis]
15 Hb_002073_170 0.1488080031 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
16 Hb_000076_030 0.1492873572 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
17 Hb_010381_100 0.1496784788 - - Phospholipase D epsilon [Morus notabilis]
18 Hb_031089_020 0.1496855722 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
19 Hb_000260_110 0.1507277198 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
20 Hb_010883_180 0.1519188825 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000025_160 Hb_000025_160 Hb_002233_160 Hb_002233_160 Hb_000025_160--Hb_002233_160 Hb_061222_010 Hb_061222_010 Hb_000025_160--Hb_061222_010 Hb_012395_110 Hb_012395_110 Hb_000025_160--Hb_012395_110 Hb_000193_340 Hb_000193_340 Hb_000025_160--Hb_000193_340 Hb_004241_110 Hb_004241_110 Hb_000025_160--Hb_004241_110 Hb_000023_110 Hb_000023_110 Hb_000025_160--Hb_000023_110 Hb_000260_110 Hb_000260_110 Hb_002233_160--Hb_000260_110 Hb_005542_070 Hb_005542_070 Hb_002233_160--Hb_005542_070 Hb_012368_050 Hb_012368_050 Hb_002233_160--Hb_012368_050 Hb_002781_040 Hb_002781_040 Hb_002233_160--Hb_002781_040 Hb_006002_050 Hb_006002_050 Hb_002233_160--Hb_006002_050 Hb_000003_110 Hb_000003_110 Hb_061222_010--Hb_000003_110 Hb_031089_020 Hb_031089_020 Hb_061222_010--Hb_031089_020 Hb_158092_040 Hb_158092_040 Hb_061222_010--Hb_158092_040 Hb_005784_060 Hb_005784_060 Hb_061222_010--Hb_005784_060 Hb_000997_240 Hb_000997_240 Hb_061222_010--Hb_000997_240 Hb_004007_070 Hb_004007_070 Hb_012395_110--Hb_004007_070 Hb_000086_090 Hb_000086_090 Hb_012395_110--Hb_000086_090 Hb_012395_110--Hb_004241_110 Hb_001102_160 Hb_001102_160 Hb_012395_110--Hb_001102_160 Hb_084147_010 Hb_084147_010 Hb_012395_110--Hb_084147_010 Hb_019516_060 Hb_019516_060 Hb_012395_110--Hb_019516_060 Hb_006153_160 Hb_006153_160 Hb_000193_340--Hb_006153_160 Hb_007101_260 Hb_007101_260 Hb_000193_340--Hb_007101_260 Hb_161396_010 Hb_161396_010 Hb_000193_340--Hb_161396_010 Hb_002759_220 Hb_002759_220 Hb_000193_340--Hb_002759_220 Hb_000808_150 Hb_000808_150 Hb_000193_340--Hb_000808_150 Hb_000328_010 Hb_000328_010 Hb_000193_340--Hb_000328_010 Hb_004241_110--Hb_084147_010 Hb_003001_130 Hb_003001_130 Hb_004241_110--Hb_003001_130 Hb_007894_070 Hb_007894_070 Hb_004241_110--Hb_007894_070 Hb_000227_280 Hb_000227_280 Hb_004241_110--Hb_000227_280 Hb_001318_100 Hb_001318_100 Hb_004241_110--Hb_001318_100 Hb_000049_270 Hb_000049_270 Hb_000023_110--Hb_000049_270 Hb_003408_010 Hb_003408_010 Hb_000023_110--Hb_003408_010 Hb_000327_360 Hb_000327_360 Hb_000023_110--Hb_000327_360 Hb_012807_150 Hb_012807_150 Hb_000023_110--Hb_012807_150 Hb_003606_050 Hb_003606_050 Hb_000023_110--Hb_003606_050 Hb_031284_030 Hb_031284_030 Hb_000023_110--Hb_031284_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0955777 2.74786 9.74683 19.4469 0.0379366 0.0347057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.480843 1.39498 1.60119 2.88661 7.57834

CAGE analysis