Hb_000025_170

Information

Type -
Description -
Location Contig25: 143251-144492
Sequence    

Annotation

kegg
ID rcu:RCOM_0218920
description hypothetical protein
nr
ID XP_002533284.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T4W5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0218920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000878_140 0.2531233597 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
3 Hb_003581_180 0.2536555111 - - Pectate lyase precursor, putative [Ricinus communis]
4 Hb_005725_150 0.2547503052 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
5 Hb_001946_350 0.2659555399 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
6 Hb_007904_250 0.2720774707 - - PREDICTED: vignain-like [Jatropha curcas]
7 Hb_001890_020 0.275276787 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
8 Hb_002641_040 0.2763553075 - - class III peroxidase [Populus trichocarpa]
9 Hb_000179_260 0.2799930426 - - PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
10 Hb_003399_100 0.2898132311 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
11 Hb_000264_120 0.2931274032 - - Stem-specific protein TSJT1, putative [Ricinus communis]
12 Hb_000599_320 0.2933074706 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
13 Hb_000215_370 0.3000453249 - - myoinositol oxygenase, putative [Ricinus communis]
14 Hb_001478_020 0.3010669912 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
15 Hb_000051_080 0.3029748892 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
16 Hb_010180_030 0.3052867848 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
17 Hb_089889_010 0.3075168127 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
18 Hb_011360_130 0.3077811587 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004410_040 0.3094718137 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001195_180 0.3117352366 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_170 Hb_000025_170 Hb_000878_140 Hb_000878_140 Hb_000025_170--Hb_000878_140 Hb_003581_180 Hb_003581_180 Hb_000025_170--Hb_003581_180 Hb_005725_150 Hb_005725_150 Hb_000025_170--Hb_005725_150 Hb_001946_350 Hb_001946_350 Hb_000025_170--Hb_001946_350 Hb_007904_250 Hb_007904_250 Hb_000025_170--Hb_007904_250 Hb_001890_020 Hb_001890_020 Hb_000025_170--Hb_001890_020 Hb_000008_380 Hb_000008_380 Hb_000878_140--Hb_000008_380 Hb_001545_070 Hb_001545_070 Hb_000878_140--Hb_001545_070 Hb_007943_060 Hb_007943_060 Hb_000878_140--Hb_007943_060 Hb_007904_240 Hb_007904_240 Hb_000878_140--Hb_007904_240 Hb_014720_010 Hb_014720_010 Hb_000878_140--Hb_014720_010 Hb_000487_120 Hb_000487_120 Hb_000878_140--Hb_000487_120 Hb_001818_030 Hb_001818_030 Hb_003581_180--Hb_001818_030 Hb_002999_040 Hb_002999_040 Hb_003581_180--Hb_002999_040 Hb_002301_090 Hb_002301_090 Hb_003581_180--Hb_002301_090 Hb_000179_260 Hb_000179_260 Hb_003581_180--Hb_000179_260 Hb_004228_060 Hb_004228_060 Hb_003581_180--Hb_004228_060 Hb_000051_080 Hb_000051_080 Hb_005725_150--Hb_000051_080 Hb_003784_040 Hb_003784_040 Hb_005725_150--Hb_003784_040 Hb_010180_030 Hb_010180_030 Hb_005725_150--Hb_010180_030 Hb_001478_020 Hb_001478_020 Hb_005725_150--Hb_001478_020 Hb_002007_040 Hb_002007_040 Hb_005725_150--Hb_002007_040 Hb_006275_060 Hb_006275_060 Hb_005725_150--Hb_006275_060 Hb_005725_200 Hb_005725_200 Hb_001946_350--Hb_005725_200 Hb_000215_370 Hb_000215_370 Hb_001946_350--Hb_000215_370 Hb_000088_220 Hb_000088_220 Hb_001946_350--Hb_000088_220 Hb_001946_350--Hb_005725_150 Hb_003399_100 Hb_003399_100 Hb_001946_350--Hb_003399_100 Hb_004453_100 Hb_004453_100 Hb_007904_250--Hb_004453_100 Hb_000010_300 Hb_000010_300 Hb_007904_250--Hb_000010_300 Hb_001214_190 Hb_001214_190 Hb_007904_250--Hb_001214_190 Hb_143813_020 Hb_143813_020 Hb_007904_250--Hb_143813_020 Hb_004193_010 Hb_004193_010 Hb_007904_250--Hb_004193_010 Hb_008173_060 Hb_008173_060 Hb_007904_250--Hb_008173_060 Hb_001890_020--Hb_005725_150 Hb_001890_020--Hb_010180_030 Hb_029510_130 Hb_029510_130 Hb_001890_020--Hb_029510_130 Hb_001890_020--Hb_003784_040 Hb_005504_040 Hb_005504_040 Hb_001890_020--Hb_005504_040 Hb_001890_020--Hb_001478_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0170567 0 0.195152 0.0548696 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0306314 0.0570809 0.0122629 0

CAGE analysis