Hb_000025_190

Information

Type -
Description -
Location Contig25: 157979-170323
Sequence    

Annotation

kegg
ID rcu:RCOM_0974240
description 26S proteasome non-atpase regulatory subunit, putative
nr
ID XP_002530834.1
description 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
swissprot
ID P55034
description 26S proteasome non-ATPase regulatory subunit 4 homolog OS=Arabidopsis thaliana GN=RPN10 PE=1 SV=1
trembl
ID B9SXW5
description 26S proteasome non-atpase regulatory subunit, putative OS=Ricinus communis GN=RCOM_0974240 PE=4 SV=1
Gene Ontology
ID GO:0008540
description 26s proteasome non-atpase regulatory subunit 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26062: 158025-169949 , PASA_asmbl_26063: 157987-170185 , PASA_asmbl_26064: 166014-166565 , PASA_asmbl_26066: 160190-160573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_190 0.0 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
2 Hb_062537_010 0.0641081544 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
3 Hb_002660_170 0.0667451235 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
4 Hb_004880_150 0.073872905 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
5 Hb_005648_010 0.0774303 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
6 Hb_003988_050 0.0784563162 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
7 Hb_000115_150 0.0801991992 - - PREDICTED: IST1 homolog [Jatropha curcas]
8 Hb_000060_050 0.0807902292 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
9 Hb_001104_230 0.0814955435 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
10 Hb_001221_020 0.0816353168 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
11 Hb_010560_050 0.0822295533 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
12 Hb_000800_090 0.0829618573 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
13 Hb_000258_240 0.0837588815 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
14 Hb_000841_050 0.0839590338 - - hypothetical protein L484_019972 [Morus notabilis]
15 Hb_000367_090 0.0855190369 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
16 Hb_007383_020 0.0865848753 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003633_050 0.0879255697 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
18 Hb_000094_210 0.0884142989 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
19 Hb_005701_120 0.0898107972 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
20 Hb_023001_040 0.0908355217 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000025_190 Hb_000025_190 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_005648_010 Hb_005648_010 Hb_000025_190--Hb_005648_010 Hb_003988_050 Hb_003988_050 Hb_000025_190--Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_000025_190--Hb_000115_150 Hb_001348_020 Hb_001348_020 Hb_062537_010--Hb_001348_020 Hb_062537_010--Hb_000115_150 Hb_023001_040 Hb_023001_040 Hb_062537_010--Hb_023001_040 Hb_062537_010--Hb_003988_050 Hb_000258_240 Hb_000258_240 Hb_062537_010--Hb_000258_240 Hb_007218_120 Hb_007218_120 Hb_002660_170--Hb_007218_120 Hb_006059_010 Hb_006059_010 Hb_002660_170--Hb_006059_010 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290 Hb_001221_020 Hb_001221_020 Hb_004880_150--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_004880_150--Hb_003776_060 Hb_004880_150--Hb_002477_290 Hb_002811_100 Hb_002811_100 Hb_004880_150--Hb_002811_100 Hb_004880_150--Hb_005648_010 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_005648_010--Hb_000115_150 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370 Hb_003988_050--Hb_000115_150 Hb_000165_080 Hb_000165_080 Hb_003988_050--Hb_000165_080 Hb_002902_130 Hb_002902_130 Hb_003988_050--Hb_002902_130 Hb_001633_080 Hb_001633_080 Hb_003988_050--Hb_001633_080 Hb_003988_050--Hb_000258_240 Hb_000115_150--Hb_000120_370 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1866 16.5427 20.1151 53.5784 12.6165 18.4984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8898 27.2547 28.0794 42.304 28.2184

CAGE analysis