Hb_000025_220

Information

Type -
Description -
Location Contig25: 195364-195621
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28080g
description hypothetical protein
nr
ID XP_006369650.1
description hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GVF3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28080g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_220 0.0 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
2 Hb_009803_010 0.1165164061 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
3 Hb_005263_010 0.119582818 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
4 Hb_000733_260 0.1380987131 - - hypothetical protein JCGZ_26934 [Jatropha curcas]
5 Hb_005368_030 0.171249402 - - -
6 Hb_003641_010 0.1940014859 - - Pectinesterase-3 precursor, putative [Ricinus communis]
7 Hb_000574_310 0.2119444725 - - hypothetical protein CISIN_1g027539mg [Citrus sinensis]
8 Hb_000092_050 0.2221778471 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
9 Hb_182507_010 0.2224315423 - - -
10 Hb_001660_140 0.2254363697 - - -
11 Hb_104362_010 0.2282666933 - - hypothetical protein POPTR_0247s002302g, partial [Populus trichocarpa]
12 Hb_005914_220 0.2317078294 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
13 Hb_000244_140 0.2319524027 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
14 Hb_000164_200 0.235791865 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
15 Hb_001428_010 0.2375871153 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
16 Hb_179286_010 0.2386030829 - - STRUWWELPETER family protein [Populus trichocarpa]
17 Hb_000172_470 0.2410589798 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
18 Hb_122741_010 0.2410955669 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
19 Hb_005723_060 0.2430724964 - - -
20 Hb_010367_020 0.2437321257 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000025_220 Hb_000025_220 Hb_009803_010 Hb_009803_010 Hb_000025_220--Hb_009803_010 Hb_005263_010 Hb_005263_010 Hb_000025_220--Hb_005263_010 Hb_000733_260 Hb_000733_260 Hb_000025_220--Hb_000733_260 Hb_005368_030 Hb_005368_030 Hb_000025_220--Hb_005368_030 Hb_003641_010 Hb_003641_010 Hb_000025_220--Hb_003641_010 Hb_000574_310 Hb_000574_310 Hb_000025_220--Hb_000574_310 Hb_122741_010 Hb_122741_010 Hb_009803_010--Hb_122741_010 Hb_009803_010--Hb_005263_010 Hb_009803_010--Hb_005368_030 Hb_010367_020 Hb_010367_020 Hb_009803_010--Hb_010367_020 Hb_182507_010 Hb_182507_010 Hb_009803_010--Hb_182507_010 Hb_005263_010--Hb_005368_030 Hb_005263_010--Hb_182507_010 Hb_001660_140 Hb_001660_140 Hb_005263_010--Hb_001660_140 Hb_013040_010 Hb_013040_010 Hb_005263_010--Hb_013040_010 Hb_000164_200 Hb_000164_200 Hb_000733_260--Hb_000164_200 Hb_000733_260--Hb_000574_310 Hb_000733_260--Hb_005263_010 Hb_068804_170 Hb_068804_170 Hb_000733_260--Hb_068804_170 Hb_000085_120 Hb_000085_120 Hb_000733_260--Hb_000085_120 Hb_005368_030--Hb_182507_010 Hb_005368_030--Hb_001660_140 Hb_005368_030--Hb_013040_010 Hb_000270_540 Hb_000270_540 Hb_005368_030--Hb_000270_540 Hb_004907_030 Hb_004907_030 Hb_005368_030--Hb_004907_030 Hb_003641_010--Hb_000085_120 Hb_003641_010--Hb_005263_010 Hb_097783_010 Hb_097783_010 Hb_003641_010--Hb_097783_010 Hb_003641_010--Hb_005368_030 Hb_003641_010--Hb_000733_260 Hb_000574_310--Hb_000164_200 Hb_001597_040 Hb_001597_040 Hb_000574_310--Hb_001597_040 Hb_001956_170 Hb_001956_170 Hb_000574_310--Hb_001956_170 Hb_007677_010 Hb_007677_010 Hb_000574_310--Hb_007677_010 Hb_003925_010 Hb_003925_010 Hb_000574_310--Hb_003925_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.224909 11.375 0 2.32919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis