Hb_000025_230

Information

Type -
Description -
Location Contig25: 198581-201285
Sequence    

Annotation

kegg
ID vvi:100265504
description 10 kDa chaperonin
nr
ID XP_002282838.1
description PREDICTED: 10 kDa chaperonin [Vitis vinifera]
swissprot
ID P34893
description 10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1
trembl
ID D7TQS3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01150 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 10 kda chaperonin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26070: 198533-201380
cDNA
(Sanger)
(ID:Location)		 012_G02.ab1: 198675-201332 , 032_N16.ab1: 198675-201331 , 035_A19.ab1: 198587-201380

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_230 0.0 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
2 Hb_001459_080 0.0819667055 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
3 Hb_003607_150 0.0917396397 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
4 Hb_008112_040 0.0927912035 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
5 Hb_168878_010 0.09566153 - - 60S ribosomal protein L32A [Hevea brasiliensis]
6 Hb_002374_170 0.0989998285 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
7 Hb_011381_060 0.0994791602 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
8 Hb_000694_040 0.1028617249 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_028841_030 0.1071482217 - - -
10 Hb_004934_030 0.1088036762 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
11 Hb_007154_020 0.1088368873 - - -
12 Hb_001934_030 0.1107588054 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
13 Hb_001143_220 0.1119258393 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
14 Hb_000297_230 0.1121148562 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
15 Hb_004453_170 0.1122162817 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
16 Hb_001776_090 0.1169644752 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
17 Hb_001545_040 0.1193372093 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
18 Hb_004787_060 0.1198733299 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
19 Hb_005186_050 0.1213687729 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
20 Hb_001998_120 0.1218621951 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_230 Hb_000025_230 Hb_001459_080 Hb_001459_080 Hb_000025_230--Hb_001459_080 Hb_003607_150 Hb_003607_150 Hb_000025_230--Hb_003607_150 Hb_008112_040 Hb_008112_040 Hb_000025_230--Hb_008112_040 Hb_168878_010 Hb_168878_010 Hb_000025_230--Hb_168878_010 Hb_002374_170 Hb_002374_170 Hb_000025_230--Hb_002374_170 Hb_011381_060 Hb_011381_060 Hb_000025_230--Hb_011381_060 Hb_001459_080--Hb_168878_010 Hb_001459_080--Hb_002374_170 Hb_004787_060 Hb_004787_060 Hb_001459_080--Hb_004787_060 Hb_000260_550 Hb_000260_550 Hb_001459_080--Hb_000260_550 Hb_028841_030 Hb_028841_030 Hb_001459_080--Hb_028841_030 Hb_005186_050 Hb_005186_050 Hb_003607_150--Hb_005186_050 Hb_003069_010 Hb_003069_010 Hb_003607_150--Hb_003069_010 Hb_000251_070 Hb_000251_070 Hb_003607_150--Hb_000251_070 Hb_002685_040 Hb_002685_040 Hb_003607_150--Hb_002685_040 Hb_007154_020 Hb_007154_020 Hb_003607_150--Hb_007154_020 Hb_003607_150--Hb_028841_030 Hb_008112_040--Hb_007154_020 Hb_013405_060 Hb_013405_060 Hb_008112_040--Hb_013405_060 Hb_004363_010 Hb_004363_010 Hb_008112_040--Hb_004363_010 Hb_008112_040--Hb_028841_030 Hb_003687_230 Hb_003687_230 Hb_008112_040--Hb_003687_230 Hb_168878_010--Hb_002374_170 Hb_168878_010--Hb_004787_060 Hb_001143_220 Hb_001143_220 Hb_168878_010--Hb_001143_220 Hb_168878_010--Hb_008112_040 Hb_002374_170--Hb_011381_060 Hb_002374_170--Hb_004787_060 Hb_002811_260 Hb_002811_260 Hb_002374_170--Hb_002811_260 Hb_002374_170--Hb_028841_030 Hb_011381_060--Hb_007154_020 Hb_145880_030 Hb_145880_030 Hb_011381_060--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_011381_060--Hb_010407_040 Hb_002045_040 Hb_002045_040 Hb_011381_060--Hb_002045_040 Hb_011381_060--Hb_028841_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.1679 27.2652 82.8576 15.6272 49.2194 36.8448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.8469 118.893 50.6036 18.1083 11.3594

CAGE analysis