Hb_000025_240

Information

Type -
Description -
Location Contig25: 204893-208016
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28100g
description POPTRDRAFT_815437; hypothetical protein
nr
ID XP_012065861.1
description PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L402
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22743 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26072: 204916-208067 , PASA_asmbl_26073: 206074-206206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_240 0.0 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
2 Hb_006541_020 0.0835961453 - - unknown [Lotus japonicus]
3 Hb_008748_020 0.0975358114 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
4 Hb_005914_200 0.105507494 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
5 Hb_006718_010 0.1088866109 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
6 Hb_014834_030 0.1090408364 - - -
7 Hb_002025_300 0.1116200442 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
8 Hb_001935_150 0.114995327 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
9 Hb_000367_210 0.1201889987 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
10 Hb_007520_060 0.1212167207 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
11 Hb_002843_210 0.121533671 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
12 Hb_004754_070 0.1239550198 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
13 Hb_000976_250 0.1250662615 - - -
14 Hb_187083_010 0.1267928926 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
15 Hb_001638_240 0.1344844494 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
16 Hb_000367_030 0.1351702412 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
17 Hb_012539_020 0.1355635519 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
18 Hb_000419_130 0.1360743543 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
19 Hb_001780_050 0.1373415152 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
20 Hb_075359_010 0.1377633925 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_000025_240 Hb_000025_240 Hb_006541_020 Hb_006541_020 Hb_000025_240--Hb_006541_020 Hb_008748_020 Hb_008748_020 Hb_000025_240--Hb_008748_020 Hb_005914_200 Hb_005914_200 Hb_000025_240--Hb_005914_200 Hb_006718_010 Hb_006718_010 Hb_000025_240--Hb_006718_010 Hb_014834_030 Hb_014834_030 Hb_000025_240--Hb_014834_030 Hb_002025_300 Hb_002025_300 Hb_000025_240--Hb_002025_300 Hb_006541_020--Hb_008748_020 Hb_006541_020--Hb_006718_010 Hb_007520_060 Hb_007520_060 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_000367_030 Hb_000367_030 Hb_006541_020--Hb_000367_030 Hb_008748_020--Hb_005914_200 Hb_004735_050 Hb_004735_050 Hb_008748_020--Hb_004735_050 Hb_004754_070 Hb_004754_070 Hb_008748_020--Hb_004754_070 Hb_004007_180 Hb_004007_180 Hb_008748_020--Hb_004007_180 Hb_001780_050 Hb_001780_050 Hb_005914_200--Hb_001780_050 Hb_000236_150 Hb_000236_150 Hb_005914_200--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_005914_200--Hb_012539_020 Hb_005914_200--Hb_004754_070 Hb_000163_130 Hb_000163_130 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_006718_010--Hb_002025_300 Hb_006718_010--Hb_000367_030 Hb_004223_260 Hb_004223_260 Hb_006718_010--Hb_004223_260 Hb_006718_010--Hb_007520_060 Hb_001935_150 Hb_001935_150 Hb_014834_030--Hb_001935_150 Hb_014834_030--Hb_000367_210 Hb_002843_210 Hb_002843_210 Hb_014834_030--Hb_002843_210 Hb_187083_010 Hb_187083_010 Hb_014834_030--Hb_187083_010 Hb_003561_030 Hb_003561_030 Hb_014834_030--Hb_003561_030 Hb_001158_150 Hb_001158_150 Hb_014834_030--Hb_001158_150 Hb_000648_020 Hb_000648_020 Hb_002025_300--Hb_000648_020 Hb_002025_300--Hb_005914_200 Hb_002025_300--Hb_002843_210 Hb_002025_300--Hb_012539_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62455 1.32972 1.53169 13.8362 1.48379 18.8183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.7153 52.0041 18.5479 9.38841 7.17403

CAGE analysis