Hb_000025_290

Information

Type -
Description -
Location Contig25: 266231-269704
Sequence    

Annotation

kegg
ID tcc:TCM_031320
description hypothetical protein
nr
ID XP_007021276.1
description Uncharacterized protein TCM_031320 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F6Y1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_031320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_290 0.0 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
2 Hb_012779_110 0.1151068305 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
3 Hb_001104_120 0.1214380613 - - -
4 Hb_007441_180 0.1265957715 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001621_180 0.1284127761 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
6 Hb_000085_200 0.1322884352 - - ATP synthase subunit H protein [Hevea brasiliensis]
7 Hb_011609_180 0.1328503975 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
8 Hb_006469_060 0.1342422218 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
9 Hb_010362_020 0.1352680472 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
10 Hb_005276_100 0.1362469433 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
11 Hb_001616_020 0.1374865775 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
12 Hb_001035_030 0.1382675116 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
13 Hb_009252_130 0.1424869831 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
14 Hb_001722_040 0.1431886736 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
15 Hb_001153_080 0.1435368234 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
16 Hb_007451_030 0.1456927368 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
17 Hb_005615_070 0.1458036021 - - Rab7 [Hevea brasiliensis]
18 Hb_000563_590 0.1462562256 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
19 Hb_002234_210 0.1464747618 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
20 Hb_000143_050 0.1471000123 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000025_290 Hb_000025_290 Hb_012779_110 Hb_012779_110 Hb_000025_290--Hb_012779_110 Hb_001104_120 Hb_001104_120 Hb_000025_290--Hb_001104_120 Hb_007441_180 Hb_007441_180 Hb_000025_290--Hb_007441_180 Hb_001621_180 Hb_001621_180 Hb_000025_290--Hb_001621_180 Hb_000085_200 Hb_000085_200 Hb_000025_290--Hb_000085_200 Hb_011609_180 Hb_011609_180 Hb_000025_290--Hb_011609_180 Hb_000580_160 Hb_000580_160 Hb_012779_110--Hb_000580_160 Hb_002221_080 Hb_002221_080 Hb_012779_110--Hb_002221_080 Hb_003023_050 Hb_003023_050 Hb_012779_110--Hb_003023_050 Hb_006469_060 Hb_006469_060 Hb_012779_110--Hb_006469_060 Hb_005276_100 Hb_005276_100 Hb_012779_110--Hb_005276_100 Hb_000563_590 Hb_000563_590 Hb_001104_120--Hb_000563_590 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_001104_120--Hb_007441_180 Hb_001804_040 Hb_001804_040 Hb_001104_120--Hb_001804_040 Hb_001104_120--Hb_001621_180 Hb_001454_330 Hb_001454_330 Hb_001104_120--Hb_001454_330 Hb_007441_180--Hb_001621_180 Hb_007441_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_007441_180--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_007441_180--Hb_000190_060 Hb_002234_210 Hb_002234_210 Hb_007441_180--Hb_002234_210 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_001621_180--Hb_000563_590 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_000085_200--Hb_011609_180 Hb_000634_050 Hb_000634_050 Hb_000085_200--Hb_000634_050 Hb_002447_030 Hb_002447_030 Hb_000085_200--Hb_002447_030 Hb_002529_100 Hb_002529_100 Hb_000085_200--Hb_002529_100 Hb_000008_320 Hb_000008_320 Hb_000085_200--Hb_000008_320 Hb_000417_110 Hb_000417_110 Hb_000085_200--Hb_000417_110 Hb_011609_180--Hb_000634_050 Hb_000212_260 Hb_000212_260 Hb_011609_180--Hb_000212_260 Hb_007741_050 Hb_007741_050 Hb_011609_180--Hb_007741_050 Hb_000144_110 Hb_000144_110 Hb_011609_180--Hb_000144_110 Hb_000648_060 Hb_000648_060 Hb_011609_180--Hb_000648_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44385 0.0995067 0.650451 0.516107 3.99651 2.25596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19901 8.59092 2.45019 0.802823 0

CAGE analysis