Hb_000025_330

Information

Type -
Description -
Location Contig25: 306198-306401
Sequence    

Annotation

kegg
ID rcu:RCOM_1478740
description hypothetical protein
nr
ID KDP43207.1
description hypothetical protein JCGZ_22759 [Jatropha curcas]
swissprot
ID Q1PFH7
description Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1
trembl
ID A0A067L4A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22759 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_330 0.0 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
2 Hb_001864_060 0.0860735276 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
3 Hb_000140_070 0.1007463887 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
4 Hb_001247_120 0.1062638803 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
5 Hb_001054_030 0.1067011994 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
6 Hb_000525_010 0.1082967071 - - ring finger protein, putative [Ricinus communis]
7 Hb_001123_290 0.1104490185 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
8 Hb_001828_130 0.1115711791 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
9 Hb_116086_010 0.1119572914 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
10 Hb_000574_100 0.1135133497 - - DEAD-box protein abstrakt [Populus trichocarpa]
11 Hb_004109_030 0.114705056 - - conserved hypothetical protein [Ricinus communis]
12 Hb_027506_020 0.1155724198 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
13 Hb_003752_100 0.1162359072 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
14 Hb_002837_110 0.1162471295 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
15 Hb_003373_040 0.1171799367 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
16 Hb_093084_070 0.1185238763 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
17 Hb_000291_090 0.1196118556 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X2 [Jatropha curcas]
18 Hb_140506_010 0.1203226554 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
19 Hb_004597_010 0.1219379439 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
20 Hb_000331_330 0.1227825222 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_330 Hb_000025_330 Hb_001864_060 Hb_001864_060 Hb_000025_330--Hb_001864_060 Hb_000140_070 Hb_000140_070 Hb_000025_330--Hb_000140_070 Hb_001247_120 Hb_001247_120 Hb_000025_330--Hb_001247_120 Hb_001054_030 Hb_001054_030 Hb_000025_330--Hb_001054_030 Hb_000525_010 Hb_000525_010 Hb_000025_330--Hb_000525_010 Hb_001123_290 Hb_001123_290 Hb_000025_330--Hb_001123_290 Hb_004109_030 Hb_004109_030 Hb_001864_060--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_001864_060--Hb_008511_090 Hb_003752_100 Hb_003752_100 Hb_001864_060--Hb_003752_100 Hb_116086_010 Hb_116086_010 Hb_001864_060--Hb_116086_010 Hb_001828_130 Hb_001828_130 Hb_001864_060--Hb_001828_130 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_076693_020 Hb_076693_020 Hb_000140_070--Hb_076693_020 Hb_001220_030 Hb_001220_030 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_005551_060 Hb_005551_060 Hb_001247_120--Hb_005551_060 Hb_001860_020 Hb_001860_020 Hb_001247_120--Hb_001860_020 Hb_001348_150 Hb_001348_150 Hb_001247_120--Hb_001348_150 Hb_001247_120--Hb_001864_060 Hb_000672_030 Hb_000672_030 Hb_001247_120--Hb_000672_030 Hb_000260_640 Hb_000260_640 Hb_001054_030--Hb_000260_640 Hb_002253_080 Hb_002253_080 Hb_001054_030--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_001054_030--Hb_003729_030 Hb_000291_090 Hb_000291_090 Hb_001054_030--Hb_000291_090 Hb_006117_080 Hb_006117_080 Hb_001054_030--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_001054_030--Hb_000321_150 Hb_007850_090 Hb_007850_090 Hb_000525_010--Hb_007850_090 Hb_001691_150 Hb_001691_150 Hb_000525_010--Hb_001691_150 Hb_000418_070 Hb_000418_070 Hb_000525_010--Hb_000418_070 Hb_003430_060 Hb_003430_060 Hb_000525_010--Hb_003430_060 Hb_000574_100 Hb_000574_100 Hb_000525_010--Hb_000574_100 Hb_001123_290--Hb_116086_010 Hb_000175_220 Hb_000175_220 Hb_001123_290--Hb_000175_220 Hb_000322_150 Hb_000322_150 Hb_001123_290--Hb_000322_150 Hb_000832_030 Hb_000832_030 Hb_001123_290--Hb_000832_030 Hb_001123_290--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_001123_290--Hb_002005_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.4573 217.37 46.2707 79.8506 82.0673 148.029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.5658 82.2046 84.1953 45.7284 36.7461

CAGE analysis