Hb_000025_340

Information

Type -
Description -
Location Contig25: 307313-309704
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28180g
description POPTRDRAFT_549389; hypothetical protein
nr
ID XP_012065875.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
swissprot
ID Q9STF9
description Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1
trembl
ID B9GG76
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28180g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26093: 308708-309862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_340 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
2 Hb_000592_090 0.1085368541 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
3 Hb_003498_090 0.1163471049 - - hypothetical protein RCOM_0867850 [Ricinus communis]
4 Hb_002272_080 0.1200422854 - - -
5 Hb_009838_050 0.1241984684 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000530_010 0.1249084524 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
7 Hb_001817_160 0.1251163202 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000191_150 0.1259451952 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
9 Hb_005048_130 0.1265793346 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
10 Hb_010997_080 0.1290934413 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
11 Hb_076693_020 0.1300061865 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
12 Hb_001864_060 0.1317264649 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
13 Hb_004032_270 0.1324261017 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
14 Hb_005260_020 0.1333467512 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
15 Hb_001912_100 0.133944541 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
16 Hb_000218_010 0.1364734339 - - -
17 Hb_000529_020 0.1368184708 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
18 Hb_001247_120 0.1377552423 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
19 Hb_000025_330 0.1385618762 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
20 Hb_093084_060 0.1389417817 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_340 Hb_000025_340 Hb_000592_090 Hb_000592_090 Hb_000025_340--Hb_000592_090 Hb_003498_090 Hb_003498_090 Hb_000025_340--Hb_003498_090 Hb_002272_080 Hb_002272_080 Hb_000025_340--Hb_002272_080 Hb_009838_050 Hb_009838_050 Hb_000025_340--Hb_009838_050 Hb_000530_010 Hb_000530_010 Hb_000025_340--Hb_000530_010 Hb_001817_160 Hb_001817_160 Hb_000025_340--Hb_001817_160 Hb_004767_050 Hb_004767_050 Hb_000592_090--Hb_004767_050 Hb_076693_020 Hb_076693_020 Hb_000592_090--Hb_076693_020 Hb_004602_040 Hb_004602_040 Hb_000592_090--Hb_004602_040 Hb_000322_150 Hb_000322_150 Hb_000592_090--Hb_000322_150 Hb_093084_060 Hb_093084_060 Hb_000592_090--Hb_093084_060 Hb_074969_010 Hb_074969_010 Hb_000592_090--Hb_074969_010 Hb_010997_080 Hb_010997_080 Hb_003498_090--Hb_010997_080 Hb_008643_040 Hb_008643_040 Hb_003498_090--Hb_008643_040 Hb_000125_130 Hb_000125_130 Hb_003498_090--Hb_000125_130 Hb_010712_030 Hb_010712_030 Hb_003498_090--Hb_010712_030 Hb_001430_120 Hb_001430_120 Hb_003498_090--Hb_001430_120 Hb_000343_160 Hb_000343_160 Hb_003498_090--Hb_000343_160 Hb_002272_080--Hb_001817_160 Hb_001437_080 Hb_001437_080 Hb_002272_080--Hb_001437_080 Hb_004880_140 Hb_004880_140 Hb_002272_080--Hb_004880_140 Hb_005260_020 Hb_005260_020 Hb_002272_080--Hb_005260_020 Hb_002272_080--Hb_010997_080 Hb_004032_270 Hb_004032_270 Hb_009838_050--Hb_004032_270 Hb_009838_050--Hb_076693_020 Hb_012807_050 Hb_012807_050 Hb_009838_050--Hb_012807_050 Hb_001318_030 Hb_001318_030 Hb_009838_050--Hb_001318_030 Hb_045793_010 Hb_045793_010 Hb_009838_050--Hb_045793_010 Hb_002435_110 Hb_002435_110 Hb_009838_050--Hb_002435_110 Hb_005048_130 Hb_005048_130 Hb_000530_010--Hb_005048_130 Hb_000062_070 Hb_000062_070 Hb_000530_010--Hb_000062_070 Hb_000191_150 Hb_000191_150 Hb_000530_010--Hb_000191_150 Hb_000116_410 Hb_000116_410 Hb_000530_010--Hb_000116_410 Hb_074715_010 Hb_074715_010 Hb_000530_010--Hb_074715_010 Hb_112798_020 Hb_112798_020 Hb_000530_010--Hb_112798_020 Hb_001817_160--Hb_010997_080 Hb_000976_310 Hb_000976_310 Hb_001817_160--Hb_000976_310 Hb_001894_050 Hb_001894_050 Hb_001817_160--Hb_001894_050 Hb_000189_560 Hb_000189_560 Hb_001817_160--Hb_000189_560 Hb_005306_190 Hb_005306_190 Hb_001817_160--Hb_005306_190 Hb_001856_230 Hb_001856_230 Hb_001817_160--Hb_001856_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9249 32.1131 4.71607 12.8067 14.4119 27.8518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2928 23.0906 9.52502 15.7405 4.2406

CAGE analysis