Hb_000025_350

Information

Type -
Description -
Location Contig25: 319897-348360
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07390g
description POPTRDRAFT_557695; pleckstrin homology domain-containing family protein
nr
ID XP_012065891.1
description PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWQ4
description Rho GTPase-activating protein 7 OS=Arabidopsis thaliana GN=ROPGAP7 PE=2 SV=1
trembl
ID A0A067LGF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22776 PE=4 SV=1
Gene Ontology
ID GO:0007165
description pleckstrin homology domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26094: 320007-348187 , PASA_asmbl_26097: 320007-348112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_350 0.0 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
2 Hb_001014_060 0.0392115559 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
3 Hb_001357_200 0.0419500729 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
4 Hb_001014_070 0.0515946376 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
5 Hb_003913_130 0.0681127516 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
6 Hb_000304_080 0.0681637989 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
7 Hb_002042_050 0.0704081599 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
8 Hb_000638_130 0.0712790044 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
9 Hb_001124_130 0.07619487 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_000476_060 0.0782414471 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
11 Hb_001488_020 0.0804492744 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
12 Hb_000567_230 0.0816286063 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
13 Hb_000703_190 0.0817838002 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
14 Hb_000243_260 0.0823818516 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
15 Hb_000260_460 0.0845079086 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
16 Hb_000363_290 0.0856707696 - - fimbrin, putative [Ricinus communis]
17 Hb_003098_070 0.087216562 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
18 Hb_089839_010 0.0873360668 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
19 Hb_000788_030 0.0890611394 - - PREDICTED: dynamin-2A [Jatropha curcas]
20 Hb_002272_030 0.0902516861 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_350 Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000025_350--Hb_001014_060 Hb_001357_200 Hb_001357_200 Hb_000025_350--Hb_001357_200 Hb_001014_070 Hb_001014_070 Hb_000025_350--Hb_001014_070 Hb_003913_130 Hb_003913_130 Hb_000025_350--Hb_003913_130 Hb_000304_080 Hb_000304_080 Hb_000025_350--Hb_000304_080 Hb_002042_050 Hb_002042_050 Hb_000025_350--Hb_002042_050 Hb_001014_060--Hb_001014_070 Hb_001014_060--Hb_001357_200 Hb_000638_130 Hb_000638_130 Hb_001014_060--Hb_000638_130 Hb_001014_060--Hb_003913_130 Hb_000120_640 Hb_000120_640 Hb_001014_060--Hb_000120_640 Hb_001357_200--Hb_003913_130 Hb_001357_200--Hb_001014_070 Hb_001357_200--Hb_000304_080 Hb_007533_040 Hb_007533_040 Hb_001357_200--Hb_007533_040 Hb_000363_290 Hb_000363_290 Hb_001014_070--Hb_000363_290 Hb_000046_540 Hb_000046_540 Hb_001014_070--Hb_000046_540 Hb_074197_040 Hb_074197_040 Hb_001014_070--Hb_074197_040 Hb_003913_130--Hb_007533_040 Hb_003913_130--Hb_000638_130 Hb_000140_090 Hb_000140_090 Hb_003913_130--Hb_000140_090 Hb_001124_130 Hb_001124_130 Hb_000304_080--Hb_001124_130 Hb_000304_080--Hb_002042_050 Hb_000476_060 Hb_000476_060 Hb_000304_080--Hb_000476_060 Hb_000567_230 Hb_000567_230 Hb_000304_080--Hb_000567_230 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002042_050--Hb_020178_040 Hb_000243_260 Hb_000243_260 Hb_002042_050--Hb_000243_260 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.336 18.8359 32.2611 24.6913 9.64016 9.26823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.116 14.5637 24.4879 20.1707 28.811

CAGE analysis