Hb_000025_360

Information

Type -
Description -
Location Contig25: 356206-363830
Sequence    

Annotation

kegg
ID rcu:RCOM_1478200
description smg-7, putative
nr
ID XP_012065894.1
description PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
swissprot
ID A9QM73
description Protein SMG7 OS=Arabidopsis thaliana GN=SMG7 PE=2 SV=1
trembl
ID A0A067LFH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22782 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein smg7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26099: 356378-363727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_360 0.0 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
2 Hb_045793_010 0.0537793801 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
3 Hb_002188_110 0.0597012123 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_000046_010 0.0615480711 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
5 Hb_001718_090 0.06416442 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
6 Hb_183963_030 0.0644854223 - - DNA binding protein, putative [Ricinus communis]
7 Hb_000107_500 0.0671653545 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
8 Hb_000487_290 0.0698069331 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
9 Hb_000077_230 0.0700681065 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
10 Hb_000441_070 0.0704534338 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
11 Hb_004162_280 0.0711536099 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
12 Hb_001247_070 0.0717244344 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
13 Hb_000291_190 0.0718538471 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
14 Hb_076693_020 0.0730912043 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
15 Hb_005188_050 0.0733345509 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000224_060 0.0735842814 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
17 Hb_006847_040 0.074410998 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
18 Hb_000865_080 0.0747000025 - - arsenite-resistance protein, putative [Ricinus communis]
19 Hb_000077_070 0.0747157875 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
20 Hb_023827_040 0.0759545905 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000025_360 Hb_000025_360 Hb_045793_010 Hb_045793_010 Hb_000025_360--Hb_045793_010 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_000827_070 Hb_000827_070 Hb_045793_010--Hb_000827_070 Hb_076693_020 Hb_076693_020 Hb_045793_010--Hb_076693_020 Hb_006847_040 Hb_006847_040 Hb_045793_010--Hb_006847_040 Hb_001021_170 Hb_001021_170 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_002188_110--Hb_183963_030 Hb_000959_040 Hb_000959_040 Hb_002188_110--Hb_000959_040 Hb_007676_100 Hb_007676_100 Hb_002188_110--Hb_007676_100 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_001247_070 Hb_001247_070 Hb_002188_110--Hb_001247_070 Hb_000046_010--Hb_001718_090 Hb_000046_010--Hb_000441_070 Hb_000510_310 Hb_000510_310 Hb_000046_010--Hb_000510_310 Hb_006252_020 Hb_006252_020 Hb_000046_010--Hb_006252_020 Hb_000046_010--Hb_002188_110 Hb_001718_090--Hb_000441_070 Hb_001718_090--Hb_006252_020 Hb_003785_040 Hb_003785_040 Hb_001718_090--Hb_003785_040 Hb_000529_260 Hb_000529_260 Hb_001718_090--Hb_000529_260 Hb_183963_030--Hb_000959_040 Hb_010578_060 Hb_010578_060 Hb_183963_030--Hb_010578_060 Hb_004128_050 Hb_004128_050 Hb_183963_030--Hb_004128_050 Hb_183963_030--Hb_001247_070 Hb_000283_070 Hb_000283_070 Hb_000107_500--Hb_000283_070 Hb_001541_020 Hb_001541_020 Hb_000107_500--Hb_001541_020 Hb_006831_110 Hb_006831_110 Hb_000107_500--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_000107_500--Hb_000002_040 Hb_000107_500--Hb_000510_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.6235 96.3659 31.111 29.036 89.9065 97.5199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.945 51.4544 60.2213 42.5338 30.8732

CAGE analysis