Hb_000025_370

Information

Type -
Description -
Location Contig25: 364847-368954
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07430g
description POPTRDRAFT_821363; hypothetical protein
nr
ID XP_012065898.1
description PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22784 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26101: 364809-368926 , PASA_asmbl_26102: 368125-368943 , PASA_asmbl_26103: 364815-368438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_370 0.0 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
2 Hb_002028_090 0.1034491342 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
3 Hb_002671_090 0.1063447529 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
4 Hb_118282_010 0.1103191396 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
5 Hb_011053_010 0.1165666563 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
6 Hb_005181_160 0.131418111 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
7 Hb_004984_030 0.1371731759 - - protein with unknown function [Ricinus communis]
8 Hb_006061_040 0.1392935889 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
9 Hb_015807_160 0.1431415392 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
10 Hb_001147_050 0.1437210699 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
11 Hb_001804_090 0.1440509649 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
12 Hb_002060_010 0.1457346944 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
13 Hb_000390_090 0.1476941816 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
14 Hb_009486_210 0.1476995206 - - -
15 Hb_100790_010 0.1491437262 - - conserved hypothetical protein [Ricinus communis]
16 Hb_146255_020 0.1519074936 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
17 Hb_001188_030 0.1534938658 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
18 Hb_000832_190 0.1543711853 - - Rab3 [Hevea brasiliensis]
19 Hb_000926_200 0.155838296 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
20 Hb_022318_020 0.1563968386 - - hypothetical protein JCGZ_00541 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_370 Hb_000025_370 Hb_002028_090 Hb_002028_090 Hb_000025_370--Hb_002028_090 Hb_002671_090 Hb_002671_090 Hb_000025_370--Hb_002671_090 Hb_118282_010 Hb_118282_010 Hb_000025_370--Hb_118282_010 Hb_011053_010 Hb_011053_010 Hb_000025_370--Hb_011053_010 Hb_005181_160 Hb_005181_160 Hb_000025_370--Hb_005181_160 Hb_004984_030 Hb_004984_030 Hb_000025_370--Hb_004984_030 Hb_002028_090--Hb_004984_030 Hb_040819_010 Hb_040819_010 Hb_002028_090--Hb_040819_010 Hb_001188_030 Hb_001188_030 Hb_002028_090--Hb_001188_030 Hb_044653_040 Hb_044653_040 Hb_002028_090--Hb_044653_040 Hb_000926_200 Hb_000926_200 Hb_002028_090--Hb_000926_200 Hb_002968_040 Hb_002968_040 Hb_002028_090--Hb_002968_040 Hb_002671_090--Hb_002028_090 Hb_000300_700 Hb_000300_700 Hb_002671_090--Hb_000300_700 Hb_001959_010 Hb_001959_010 Hb_002671_090--Hb_001959_010 Hb_002260_010 Hb_002260_010 Hb_002671_090--Hb_002260_010 Hb_002671_090--Hb_001188_030 Hb_118282_010--Hb_011053_010 Hb_000740_040 Hb_000740_040 Hb_118282_010--Hb_000740_040 Hb_006445_020 Hb_006445_020 Hb_118282_010--Hb_006445_020 Hb_002909_020 Hb_002909_020 Hb_118282_010--Hb_002909_020 Hb_001073_080 Hb_001073_080 Hb_118282_010--Hb_001073_080 Hb_000413_060 Hb_000413_060 Hb_011053_010--Hb_000413_060 Hb_000390_090 Hb_000390_090 Hb_011053_010--Hb_000390_090 Hb_006061_040 Hb_006061_040 Hb_011053_010--Hb_006061_040 Hb_000163_100 Hb_000163_100 Hb_011053_010--Hb_000163_100 Hb_002343_040 Hb_002343_040 Hb_011053_010--Hb_002343_040 Hb_146255_020 Hb_146255_020 Hb_011053_010--Hb_146255_020 Hb_001221_330 Hb_001221_330 Hb_005181_160--Hb_001221_330 Hb_007741_130 Hb_007741_130 Hb_005181_160--Hb_007741_130 Hb_004005_020 Hb_004005_020 Hb_005181_160--Hb_004005_020 Hb_000368_030 Hb_000368_030 Hb_005181_160--Hb_000368_030 Hb_002249_070 Hb_002249_070 Hb_005181_160--Hb_002249_070 Hb_000832_190 Hb_000832_190 Hb_004984_030--Hb_000832_190 Hb_004984_030--Hb_000926_200 Hb_000946_090 Hb_000946_090 Hb_004984_030--Hb_000946_090 Hb_004984_030--Hb_040819_010 Hb_005460_060 Hb_005460_060 Hb_004984_030--Hb_005460_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0791 5.36237 17.2831 6.20621 1.60135 1.93837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88948 14.4637 7.32305 4.49026 4.29498

CAGE analysis